Crystallography Open Database

Information card for entry 7109649

Preview

Coordinates	7109649.cif
Original paper (by DOI)	HTML

Structure parameters

Common name	Complex between enterobactin and silicon
Formula	C32 H28 N3 Na2 O18 Si
Calculated formula	C31.9999 H27.9997 N3 Na2 O18 Si
SMILES	[Na+].O1c2cccc3C(N[C@H]4COC(=O)[C@H]5NC(=O)c6c7c(ccc6)O[Si]16(O7)(Oc23)Oc1c(C(=O)N[C@H](C(=O)OC5)COC4=O)cccc1O6)=O.O.[Na+].OC.OC
Title of publication	Si-enterobactin from the endophytic Streptomyces sp. KT-S1-B5 ‒ a potential silicon transporter in Nature?
Authors of publication	Timothee J. N. Kenla; Michel D. Kongue Tatong; Ferdinand Mouafo Talontsi; Birger Dittrich; Holm Frauendorf; Hartmut Laatsch
Journal of publication	Chem.Commun.
Year of publication	2013
Journal volume	49
Pages of publication	7641
a	11.2372 ± 0.0018 Å
b	9.8524 ± 0.0015 Å
c	15.84 ± 0.003 Å
α	90°
β	106.713 ± 0.008°
γ	90°
Cell volume	1679.6 ± 0.5 Å³
Cell temperature	100 ± 2 K
Ambient diffraction temperature	100 ± 2 K
Number of distinct elements	6
Space group number	4
Hermann-Mauguin space group symbol	P 1 21 1
Hall space group symbol	P 2yb
Residual factor for all reflections	0.031
Residual factor for significantly intense reflections	0.0293
Weighted residual factors for significantly intense reflections	0.0768
Weighted residual factors for all reflections included in the refinement	0.0782
Goodness-of-fit parameter for all reflections included in the refinement	1.038
Diffraction radiation wavelength	1.54178 Å
Diffraction radiation type	CuKα
Has coordinates	Yes
Has disorder	Yes
Has F_obs	No

Version history

Revision	Date	Message	Files
180202 (current)	2016-03-26	cif/7/10/ (antanas@kurmis) Replacing _[local]_cod_* tags with their equivalents from the COD CIF dictionary in multiple entries in subrange 7/10/96.	7109649.cif
106525	2014-03-15	cif/ (saulius@koala.ibt.lt) Adding DOIs to those Chem. Comm. structure descriptions that did not have it before and that could be matched unambiguously. Unambiguously means: a) journal name is "like 'Chem%Com%'" in SQl parlour b) first author's last name is the same in COD and in PubMed b) publication year and first page are the same in COD and in PubMed database. The commands to change these files where: awk '{print $1, $2}' outputs/join-dois.tab \ \| xargs -i sh -c ' CODID=$(echo {} \| awk "{print \$1}"); DOI=$(echo {} \| awk "{print \$2}"); CODFILE=$(echo $CODID \| codid2file); if ! grep -q _journal_paper_doi $CODFILE; then ( set -x; echo _journal_paper_doi $DOI >> $CODFILE ); else echo $CODID already has DOI; fi' Some files that did not had new-line at the end had to be fixed afterwards (in the ~/struct/cod/cif/7 directory, a COD working copy): svn st \ \| awk '{print $2}' \ \| xargs cifparse -q 2> /dev/null \ \| awk -F"'" '{print $2}' \ \| xargs perl -i -pe 's/_journal_paper_doi/\n_journal_paper_doi/' The working copy containing 'outputs/join-dois.tab' was: Path: /home/saulius/struct/xyz-extraction/dois/chem-comm-refetched-from-pubmed URL: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/xyz-extraction/dois/chem-comm-refetched-from-pubmed Repository Root: svn+ssh://pitonas.ibt.lt/home/xray/svn-repositories/xyz-extraction Repository UUID: 9acf3947-1f02-0410-ae2a-984b57ad209b Revision: 2871 Node Kind: directory Schedule: normal Last Changed Author: saulius Last Changed Rev: 2871 Last Changed Date: 2014-03-15 11:18:46 +0200 (Sat, 15 Mar 2014) Three conflicts in files 10/81/7108128.cif, 10/81/7108130.cif and 10/99/7109903.cif were resolved manually.	7109649.cif
88093	2013-09-02	cif/ Adding structures of 7109649 via cif-deposit CGI script.	7109649.cif