#------------------------------------------------------------------------------ #$Date: 2016-01-20 10:31:22 +0200 (Wed, 20 Jan 2016) $ #$Revision: 174611 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/22/39/7223943.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7223943 loop_ _publ_author_name 'Kumar, Manish' 'Kumar, Rajesh' 'rana, neha' 'Prasad, Ashok K.' _publ_section_title ; Synthesis of 3′-azido/-amino-xylobicyclonucleosides ; _journal_name_full 'RSC Adv.' _journal_paper_doi 10.1039/C5RA25222A _journal_year 2016 _chemical_formula_moiety 'C10 H11 N5 O5' _chemical_formula_sum 'C10 H11 N5 O5' _chemical_formula_weight 281.24 _chemical_name_systematic ; ? ; _space_group_IT_number 4 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall 'P 2yb' _symmetry_space_group_name_H-M 'P 1 21 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _audit_update_record ; 2015-08-25 deposited with the CCDC. 2016-01-18 downloaded from the CCDC. ; _cell_angle_alpha 90.00 _cell_angle_beta 93.72(3) _cell_angle_gamma 90.00 _cell_formula_units_Z 2 _cell_length_a 6.5121(16) _cell_length_b 6.8206(14) _cell_length_c 13.045(4) _cell_measurement_temperature 293(2) _cell_volume 578.2(3) _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _diffrn_ambient_temperature 293(2) _diffrn_measured_fraction_theta_full 0.994 _diffrn_measured_fraction_theta_max 0.994 _diffrn_measurement_device_type 'Xcalibur, Sapphire3' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0518 _diffrn_reflns_av_sigmaI/netI 0.0777 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 15 _diffrn_reflns_limit_l_min -15 _diffrn_reflns_number 3239 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 3.13 _exptl_absorpt_coefficient_mu 0.132 _exptl_crystal_colour WHITE _exptl_crystal_density_diffrn 1.615 _exptl_crystal_density_method 'not measured' _exptl_crystal_description BLOCK _exptl_crystal_F_000 292 _refine_diff_density_max 0.203 _refine_diff_density_min -0.273 _refine_diff_density_rms 0.053 _refine_ls_abs_structure_details 'Flack H D (1983), Acta Cryst. A39, 876-881' _refine_ls_abs_structure_Flack 4(3) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.911 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 181 _refine_ls_number_reflns 1747 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 0.911 _refine_ls_R_factor_all 0.0867 _refine_ls_R_factor_gt 0.0652 _refine_ls_shift/su_max 0.080 _refine_ls_shift/su_mean 0.014 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1355P)^2^+0.0000P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1776 _refine_ls_wR_factor_ref 0.2016 _reflns_number_gt 1300 _reflns_number_total 1747 _reflns_threshold_expression >2sigma(I) _cod_data_source_file c5ra25222a2.cif _cod_data_source_block shelxl _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'MONOCLINIC' changed to 'monoclinic' according to /usr/data/users/saulius/crontab/automatic-downloads/rss-feeds/RSC/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 4268 2015-11-12 08:31:59Z antanas ; _cod_original_sg_symbol_H-M 'P 21' _cod_database_code 7223943 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags O2 O 0.9788(6) 0.4029(7) 1.0247(3) 0.0528(12) Uani 1 1 d . O3 O 0.1272(6) 0.4944(6) 0.8053(3) 0.0455(10) Uani 1 1 d . O4 O 0.0377(7) 0.2339(7) 0.6487(4) 0.0593(13) Uani 1 1 d . N1 N 0.4551(7) 0.3550(7) 0.8472(3) 0.0399(11) Uani 1 1 d . O5 O -0.0345(7) 0.8435(8) 0.6092(3) 0.0655(14) Uani 1 1 d . H5 H -0.0700 0.9587 0.6109 0.098 Uiso 1 1 calc R N2 N 0.7517(7) 0.2226(7) 0.9256(4) 0.0420(12) Uani 1 1 d . H2 H 0.8299 0.1230 0.9390 0.050 Uiso 1 1 calc R O1 O 0.5221(7) 0.0300(7) 0.8338(4) 0.0563(12) Uani 1 1 d . C6 C 0.2463(8) 0.3238(9) 0.7926(4) 0.0406(14) Uani 1 1 d . H6 H 0.1790 0.2115 0.8232 0.049 Uiso 1 1 calc R C7 C 0.2424(9) 0.2967(9) 0.6759(4) 0.0418(14) Uani 1 1 d . H7 H 0.3517 0.2141 0.6510 0.050 Uiso 1 1 calc R N4 N 0.4495(8) 0.7612(10) 0.6096(4) 0.0536(14) Uani 1 1 d . C3 C 0.5163(9) 0.5368(9) 0.8822(4) 0.0420(14) Uani 1 1 d . H3 H 0.4335 0.6449 0.8659 0.050 Uiso 1 1 calc R C9 C 0.0559(9) 0.5603(10) 0.7020(4) 0.0453(15) Uani 1 1 d . N3 N 0.4279(8) 0.6134(9) 0.6632(4) 0.0517(14) Uani 1 1 d . C4 C 0.6911(10) 0.5618(8) 0.9387(4) 0.0416(14) Uani 1 1 d . H4 H 0.7302 0.6870 0.9603 0.050 Uiso 1 1 calc R C5 C 0.8186(8) 0.3996(9) 0.9663(4) 0.0406(13) Uani 1 1 d . C1 C 0.5749(9) 0.1881(9) 0.8664(4) 0.0394(13) Uani 1 1 d . N5 N 0.4881(10) 0.8980(12) 0.5652(6) 0.0739(18) Uani 1 1 d . C10 C -0.0953(10) 0.4069(11) 0.6616(5) 0.0553(17) Uani 1 1 d . H10A H -0.1981 0.3807 0.7104 0.066 Uiso 1 1 calc R H10B H -0.1635 0.4468 0.5967 0.066 Uiso 1 1 calc R C8 C 0.2385(9) 0.5107(12) 0.6374(4) 0.0505(16) Uani 1 1 d . H8 H 0.1996 0.5182 0.5637 0.061 Uiso 1 1 calc R C11 C -0.0095(11) 0.7686(10) 0.7114(5) 0.0529(16) Uani 1 1 d . H11A H -0.1380 0.7766 0.7448 0.063 Uiso 1 1 calc R H11B H 0.0943 0.8429 0.7515 0.063 Uiso 1 1 calc R loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O2 0.050(2) 0.042(3) 0.063(3) 0.009(2) -0.019(2) -0.007(2) O3 0.043(2) 0.052(3) 0.041(2) 0.001(2) -0.0034(17) 0.0078(19) O4 0.060(3) 0.045(3) 0.070(3) -0.001(2) -0.017(2) -0.005(2) N1 0.044(3) 0.036(3) 0.038(2) 0.002(2) -0.004(2) 0.002(2) O5 0.084(3) 0.060(3) 0.049(3) -0.002(2) -0.017(2) 0.022(3) N2 0.044(3) 0.034(3) 0.046(3) 0.004(2) -0.006(2) 0.000(2) O1 0.059(3) 0.040(3) 0.068(3) -0.004(2) -0.013(2) -0.005(2) C6 0.038(3) 0.040(4) 0.043(3) 0.008(3) -0.004(2) 0.000(3) C7 0.043(3) 0.038(3) 0.043(3) -0.001(3) -0.008(2) 0.004(3) N4 0.041(3) 0.068(4) 0.052(3) 0.005(3) 0.006(2) 0.006(3) C3 0.050(3) 0.035(3) 0.041(3) 0.007(3) 0.006(3) 0.005(3) C9 0.045(3) 0.056(4) 0.035(3) 0.003(3) -0.002(2) 0.005(3) N3 0.046(3) 0.065(4) 0.044(3) 0.008(3) -0.001(2) -0.007(3) C4 0.059(4) 0.021(3) 0.044(3) -0.006(2) -0.008(3) 0.004(3) C5 0.040(3) 0.035(3) 0.047(3) 0.006(3) -0.003(3) -0.003(3) C1 0.043(3) 0.036(3) 0.039(3) 0.008(3) 0.004(3) 0.001(3) N5 0.070(4) 0.068(4) 0.084(4) 0.020(4) 0.011(3) -0.002(4) C10 0.052(4) 0.060(4) 0.052(4) -0.003(3) -0.008(3) -0.006(3) C8 0.045(3) 0.073(5) 0.033(3) 0.006(3) 0.002(2) 0.000(3) C11 0.061(4) 0.047(4) 0.050(4) -0.007(3) -0.001(3) 0.007(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C6 O3 C9 106.7(4) C7 O4 C10 106.1(5) C3 N1 C1 122.1(5) C3 N1 C6 121.2(5) C1 N1 C6 116.5(5) C11 O5 H5 109.5 C5 N2 C1 127.1(5) C5 N2 H2 116.4 C1 N2 H2 116.4 O3 C6 N1 108.2(4) O3 C6 C7 104.0(4) N1 C6 C7 116.3(5) O3 C6 H6 109.4 N1 C6 H6 109.4 C7 C6 H6 109.3 O4 C7 C6 103.9(5) O4 C7 C8 102.0(5) C6 C7 C8 102.0(4) O4 C7 H7 115.7 C6 C7 H7 115.7 C8 C7 H7 115.7 N5 N4 N3 173.2(7) C4 C3 N1 121.4(5) C4 C3 H3 119.3 N1 C3 H3 119.3 O3 C9 C11 107.0(5) O3 C9 C10 105.6(5) C11 C9 C10 120.5(6) O3 C9 C8 103.0(4) C11 C9 C8 119.3(6) C10 C9 C8 99.6(5) N4 N3 C8 113.0(5) C3 C4 C5 120.6(5) C3 C4 H4 119.7 C5 C4 H4 119.7 O2 C5 N2 118.8(6) O2 C5 C4 126.4(6) N2 C5 C4 114.8(4) O1 C1 N1 121.7(5) O1 C1 N2 124.5(6) N1 C1 N2 113.7(5) O4 C10 C9 102.7(5) O4 C10 H10A 111.2 C9 C10 H10A 111.2 O4 C10 H10B 111.2 C9 C10 H10B 111.2 H10A C10 H10B 109.1 N3 C8 C9 116.5(6) N3 C8 C7 112.9(5) C9 C8 C7 91.5(5) N3 C8 H8 111.5 C9 C8 H8 111.5 C7 C8 H8 111.5 O5 C11 C9 106.3(5) O5 C11 H11A 110.5 C9 C11 H11A 110.5 O5 C11 H11B 110.5 C9 C11 H11B 110.5 H11A C11 H11B 108.7 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O2 C5 1.251(6) O3 C6 1.414(7) O3 C9 1.467(7) O4 C7 1.423(7) O4 C10 1.480(9) N1 C3 1.371(8) N1 C1 1.394(7) N1 C6 1.509(7) O5 C11 1.427(8) O5 H5 0.8200 N2 C5 1.378(8) N2 C1 1.364(8) N2 H2 0.8600 O1 C1 1.201(7) C6 C7 1.531(8) C6 H6 0.9800 C7 C8 1.543(9) C7 H7 0.9800 N4 N5 1.135(10) N4 N3 1.240(8) C3 C4 1.326(8) C3 H3 0.9300 C9 C11 1.490(9) C9 C10 1.508(9) C9 C8 1.539(9) N3 C8 1.439(8) C4 C5 1.416(8) C4 H4 0.9300 C10 H10A 0.9700 C10 H10B 0.9700 C8 H8 0.9800 C11 H11A 0.9700 C11 H11B 0.9700 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion C9 O3 C6 N1 125.0(5) C9 O3 C6 C7 0.8(5) C3 N1 C6 O3 -11.7(7) C1 N1 C6 O3 163.8(5) C3 N1 C6 C7 104.8(6) C1 N1 C6 C7 -79.6(6) C10 O4 C7 C6 71.0(5) C10 O4 C7 C8 -34.8(6) O3 C6 C7 O4 -71.9(5) N1 C6 C7 O4 169.3(5) O3 C6 C7 C8 33.9(6) N1 C6 C7 C8 -85.0(6) C1 N1 C3 C4 -1.9(8) C6 N1 C3 C4 173.5(5) C6 O3 C9 C11 -162.1(5) C6 O3 C9 C10 68.5(6) C6 O3 C9 C8 -35.5(6) N5 N4 N3 C8 -175(6) N1 C3 C4 C5 -1.2(9) C1 N2 C5 O2 175.4(6) C1 N2 C5 C4 -2.9(8) C3 C4 C5 O2 -174.8(6) C3 C4 C5 N2 3.3(8) C3 N1 C1 O1 -178.5(6) C6 N1 C1 O1 6.0(8) C3 N1 C1 N2 2.3(7) C6 N1 C1 N2 -173.2(5) C5 N2 C1 O1 -179.0(6) C5 N2 C1 N1 0.2(8) C7 O4 C10 C9 -2.4(6) O3 C9 C10 O4 -68.1(6) C11 C9 C10 O4 170.9(6) C8 C9 C10 O4 38.5(6) N4 N3 C8 C9 -95.3(7) N4 N3 C8 C7 160.7(6) O3 C9 C8 N3 -64.1(7) C11 C9 C8 N3 54.2(8) C10 C9 C8 N3 -172.6(6) O3 C9 C8 C7 52.5(5) C11 C9 C8 C7 170.8(5) C10 C9 C8 C7 -56.0(5) O4 C7 C8 N3 175.7(5) C6 C7 C8 N3 68.5(6) O4 C7 C8 C9 56.0(5) C6 C7 C8 C9 -51.2(5) O3 C9 C11 O5 167.4(5) C10 C9 C11 O5 -72.2(7) C8 C9 C11 O5 51.2(7)