#------------------------------------------------------------------------------ #$Date: 2016-05-06 05:19:40 +0300 (Fri, 06 May 2016) $ #$Revision: 182798 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/22/48/7224883.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7224883 loop_ _publ_author_name 'Patyk, Ewa' 'Jenczak, Anna' 'Katrusiak, Andrzej' _publ_section_title ; Giant strain geared to transformable H-bonded network in compressed \b-d-mannose. ; _journal_issue 16 _journal_name_full 'Physical chemistry chemical physics : PCCP' _journal_page_first 11474 _journal_page_last 11479 _journal_paper_doi 10.1039/c6cp01286h _journal_volume 18 _journal_year 2016 _chemical_absolute_configuration rm _chemical_formula_moiety 'C6 H12 O6' _chemical_formula_sum 'C6 H12 O6' _chemical_formula_weight 180.16 _chemical_melting_point 400 _chemical_name_common \b-D-mannose _chemical_name_systematic \b-D-mannopyranose _space_group_crystal_system orthorhombic _space_group_IT_number 19 _space_group_name_Hall 'P 2ac 2ab' _space_group_name_H-M_alt 'P 21 21 21' _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _audit_creation_method SHELXL-2014/7 _audit_update_record ; 2016-02-04 deposited with the CCDC. 2016-04-08 downloaded from the CCDC. ; _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 4.620(3) _cell_length_b 8.422(5) _cell_length_c 17.29(3) _cell_measurement_reflns_used 230 _cell_measurement_temperature 295(2) _cell_measurement_theta_max 14.8750 _cell_measurement_theta_min 4.5590 _cell_volume 672.7(13) _computing_cell_refinement 'CrysAlisPro, Agilent Technologies,Version 1.171.37.31 ' _computing_data_collection 'CrysAlisPro, Agilent Technologies,Version 1.171.37.31 ' _computing_data_reduction 'CrysAlisPro, Agilent Technologies,Version 1.171.37.31 ' _computing_structure_refinement 'SHELXL-2014/7 (Sheldrick, 2014)' _computing_structure_solution 'ShelXS (Sheldrick, 2008)' _diffrn_ambient_environment 'diamond-anvil cell' _diffrn_ambient_pressure 2100000 _diffrn_ambient_temperature 295(2) _diffrn_detector_area_resol_mean 16.2413 _diffrn_measured_fraction_theta_full 0.377 _diffrn_measured_fraction_theta_max 0.345 _diffrn_measurement_device_type 'Xcalibur, Eos' _diffrn_measurement_method '\f- and \w-scans' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0879 _diffrn_reflns_av_unetI/netI 0.1131 _diffrn_reflns_Laue_measured_fraction_full 0.377 _diffrn_reflns_Laue_measured_fraction_max 0.345 _diffrn_reflns_limit_h_max 5 _diffrn_reflns_limit_h_min -5 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 11 _diffrn_reflns_limit_l_min -11 _diffrn_reflns_number 1817 _diffrn_reflns_point_group_measured_fraction_full 0.383 _diffrn_reflns_point_group_measured_fraction_max 0.345 _diffrn_reflns_theta_full 25.242 _diffrn_reflns_theta_max 26.368 _diffrn_reflns_theta_min 4.567 _diffrn_source 'Enhance (Mo) X-ray Source' _exptl_absorpt_coefficient_mu 0.161 _exptl_absorpt_correction_type none _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.778 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 384 _exptl_crystal_size_max 0.20 _exptl_crystal_size_mid 0.11 _exptl_crystal_size_min 0.10 _refine_diff_density_max 0.177 _refine_diff_density_min -0.174 _refine_diff_density_rms 0.049 _refine_ls_abs_structure_details ; Flack x determined using 76 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259). ; _refine_ls_abs_structure_Flack 3.3(10) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.009 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 44 _refine_ls_number_reflns 476 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.009 _refine_ls_R_factor_all 0.0943 _refine_ls_R_factor_gt 0.0614 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0438P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1129 _refine_ls_wR_factor_ref 0.1220 _reflns_Friedel_coverage 0.641 _reflns_Friedel_fraction_full 0.392 _reflns_Friedel_fraction_max 0.346 _reflns_number_gt 288 _reflns_number_total 476 _reflns_threshold_expression 'I > 2\s(I)' _cod_data_source_file c6cp01286h6.cif _cod_data_source_block bman5_2100MPa _cod_depositor_comments 'Adding full bibliography for 7224879--7224889.cif.' _cod_original_cell_volume 672.9(14) _cod_database_code 7224883 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_res_file ; bman5.res created by SHELXL-2014/7 TITL 1 in P2(1)2(1)2(1) CELL 0.71073 4.6200 8.4224 17.2941 90.000 90.000 90.000 ZERR 4.00 0.0030 0.0048 0.0321 0.000 0.000 0.000 LATT -1 SYMM 0.5-X, -Y, 0.5+Z SYMM -X, 0.5+Y, 0.5-Z SYMM 0.5+X, 0.5-Y, -Z SFAC C H O UNIT 24 48 24 L.S. 100 BOND FMAP 2 PLAN 20 acta EQIV $1 1-X, -0.5+Y, 0.5-Z EQIV $2 1-X, 0.5+Y, 0.5-Z EQIV $3 0.5+X, 1.5-Y, -Z EQIV $4 0.5+X, 0.5-Y, -Z EQIV $5 -X, -0.5+Y, 0.5-Z EQIV $6 -0.5+X, 1.5-Y, -Z EQIV $7 X, 1+Y, Z EQIV $8 X, -1+Y, Z EQIV $9 -1+X, Y, Z EQIV $10 -X, 0.5+Y, 0.5-Z EQIV $11 -0.5+X, 0.5-Y, -Z RTAB oho1 O1 O3_$1 RTAB oho1 H8 O3_$1 RTAB oho1 O1 H8 O3_$1 RTAB oho1 C1 O1 O3_$1 RTAB oho1 O1 O3_$1 c3_$1 RTAB oho2 O1 O6_$2 RTAB oho2 H8 O6_$2 RTAB oho2 O1 H8 O6_$2 RTAB oho2 C1 O1 O6_$2 RTAB oho2 O1 O6_$2 c6_$2 RTAB oho3 O2 O5_$2 RTAB oho3 H9 O5_$2 RTAB oho3 O2 H9 O5_$2 RTAB oho3 C2 O2 O5_$2 RTAB oho4 O2 O1_$2 RTAB oho4 H9 O1_$2 RTAB oho4 O2 H9 O1_$2 RTAB oho4 C2 O2 O1_$2 RTAB oho4 O2 O1_$2 c1_$2 RTAB oho5 O3 O4_$3 RTAB oho5 H10 O4_$3 RTAB oho5 O3 H10 O4_$3 RTAB oho5 C3 O3 O4_$3 RTAB oho5 O3 O4_$3 c4_$3 RTAB oho6 O3 O4_$6 RTAB oho6 H10 O4_$6 RTAB oho6 O3 H10 O4_$6 RTAB oho6 C3 O3 O4_$6 RTAB oho6 O3 O4_$6 c4_$6 RTAB oho7 O3 O3_$6 RTAB oho7 H10 O3_$6 RTAB oho7 O3 H10 O3_$6 RTAB oho7 C3 O3 O3_$6 RTAB oho7 O3 O3_$6 c3_$6 RTAB oo1 O3 O6_$7 RTAB oo1 H10 O6_$7 RTAB oo1 O3 H10 O6_$7 RTAB oo1 C3 O3 O6_$7 RTAB oo1 O3 O6_$7 c6_$7 RTAB oho8 O4 O6_$4 RTAB oho8 H11 O6_$4 RTAB oho8 O4 H11 O6_$4 RTAB oho8 C4 O4 O6_$4 RTAB oho8 O4 O6_$4 c6_$4 RTAB oho9 O4 O3_$6 RTAB oho9 H11 O3_$6 RTAB oho9 O4 H11 O3_$6 RTAB oho9 C4 O4 O3_$6 RTAB oho9 O4 O3_$6 c3_$6 RTAB oh10 O6 O1_$5 RTAB oh10 H12 O1_$5 RTAB oh10 O6 H12 O1_$5 RTAB oh10 C6 O6 O1_$5 RTAB oh10 O6 O1_$5 c1_$5 RTAB oo2 O6 O3_$8 RTAB oo2 H12 O3_$8 RTAB oo2 O6 H12 O3_$8 RTAB oo2 C6 O6 O3_$8 RTAB oo2 O6 O3_$8 c3_$8 RTAB cho1 C1 O2_$9 RTAB cho1 H1 O2_$9 RTAB cho1 C1 H1 O2_$9 RTAB cho1 C1 O2_$9 c2_$9 RTAB cho2 C2 O1_$10 RTAB cho2 H2 O1_$10 RTAB cho2 C2 H2 O1_$10 RTAB cho2 C2 O1_$10 c1_$10 RTAB cho3 C2 O2_$9 RTAB cho3 H2 O2_$9 RTAB cho3 C2 H2 O2_$9 RTAB cho3 C2 O2_$9 c2_$9 RTAB cho4 C2 O2_$2 RTAB cho4 H2 O2_$2 RTAB cho4 C2 H2 O2_$2 RTAB cho4 C2 O2_$2 c2_$2 RTAB cho5 C2 O5_$10 RTAB cho5 H2 O5_$10 RTAB cho5 C2 H2 O5_$10 RTAB cho6 C3 O2_$9 RTAB cho6 H3 O2_$9 RTAB cho6 C3 H3 O2_$9 RTAB cho6 C3 O2_$9 c2_$9 RTAB cho7 C3 O3_$6 RTAB cho7 H3 O3_$6 RTAB cho7 C3 H3 O3_$6 RTAB cho7 C3 O3_$6 c3_$6 RTAB cho8 C3 O4_$6 RTAB cho8 H3 O4_$6 RTAB cho8 C3 H3 O4_$6 RTAB cho8 C3 O4_$6 c4_$6 RTAB cho9 C3 O6_$7 RTAB cho9 H3 O6_$7 RTAB cho9 C3 H3 O6_$7 RTAB cho9 C3 O6_$7 c6_$7 RTAB ch10 C4 O3_$3 RTAB ch10 H4 O3_$3 RTAB ch10 C4 H4 O3_$3 RTAB ch10 C4 O3_$3 c3_$3 RTAB ch11 C6 O6_$4 RTAB ch11 H6 O6_$4 RTAB ch11 C6 H6 O6_$4 RTAB ch11 C6 O6_$4 c6_$4 RTAB ch12 C6 O3_$8 RTAB ch12 H7 O3_$8 RTAB ch12 C6 H7 O3_$8 RTAB ch12 C6 O3_$8 c3_$8 RTAB hh1 H1 H9_$9 RTAB hh2 H3 H4_$9 RTAB hh3 H3 H10_$6 RTAB hh4 H3 H11_$6 RTAB hh5 H4 H10_$3 RTAB hh6 H5 H7_$9 RTAB hh7 H6 H7_$11 RTAB hh8 H7 H8_$1 RTAB hh9 H8 H9_$1 RTAB hh10 H8 H12_$10 RTAB hh11 H10 H11_$3 RTAB hh12 H10 H11_$6 RTAB hh13 H11 H12_$4 WGHT 0.043800 FVAR 5.85511 0.03703 C1 1 0.130059 0.560174 0.217902 11.00000 21.00000 AFIX 13 H1 2 -0.079076 0.546342 0.211240 11.00000 -1.20000 AFIX 0 C2 1 0.228554 0.707432 0.177860 11.00000 21.00000 AFIX 13 H2 2 0.120998 0.799307 0.197443 11.00000 -1.20000 AFIX 0 C3 1 0.165326 0.683967 0.092059 11.00000 21.00000 AFIX 13 H3 2 -0.043537 0.669199 0.085265 11.00000 -1.20000 AFIX 0 C4 1 0.318763 0.537718 0.063904 11.00000 21.00000 AFIX 13 H4 2 0.526598 0.551962 0.072868 11.00000 -1.20000 AFIX 0 C5 1 0.223070 0.396345 0.107639 11.00000 21.00000 AFIX 13 H5 2 0.013516 0.384565 0.100980 11.00000 -1.20000 AFIX 0 C6 1 0.363441 0.245264 0.085984 11.00000 21.00000 AFIX 23 H6 2 0.308490 0.219133 0.033368 11.00000 -1.20000 H7 2 0.571550 0.260434 0.086716 11.00000 -1.20000 AFIX 0 O1 3 0.200883 0.567037 0.298215 11.00000 0.05121 AFIX 83 H8 2 0.364812 0.602794 0.303425 11.00000 -1.50000 AFIX 0 O2 3 0.528207 0.733586 0.185748 11.00000 0.04813 AFIX 83 H9 2 0.557157 0.796138 0.221250 11.00000 -1.50000 AFIX 0 O3 3 0.255473 0.817106 0.047055 11.00000 0.03811 AFIX 83 H10 2 0.114310 0.856949 0.025852 11.00000 -1.50000 AFIX 0 O4 3 0.276572 0.505364 -0.016465 11.00000 0.04924 AFIX 83 H11 2 0.133719 0.553576 -0.031974 11.00000 -1.50000 AFIX 0 O5 3 0.283679 0.420275 0.190009 11.00000 0.03693 O6 3 0.292415 0.111745 0.135495 11.00000 0.04705 AFIX 83 H12 2 0.116068 0.104260 0.139437 11.00000 -1.50000 AFIX 0 HKLF 4 REM 1 in P2(1)2(1)2(1) REM R1 = 0.0614 for 288 Fo > 4sig(Fo) and 0.0943 for all 476 data REM 44 parameters refined using 0 restraints END WGHT 0.0635 0.0000 REM Highest difference peak 0.177, deepest hole -0.174, 1-sigma level 0.049 Q1 1 0.0698 0.6356 -0.0864 11.00000 0.05 0.18 Q2 1 0.1969 0.4042 0.1264 11.00000 0.05 0.17 Q3 1 0.2856 0.7471 0.1765 11.00000 0.05 0.17 Q4 1 0.3497 0.5960 -0.0777 11.00000 0.05 0.16 Q5 1 0.2435 0.8269 -0.0038 11.00000 0.05 0.14 Q6 1 0.0755 0.4558 0.3206 11.00000 0.05 0.14 Q7 1 0.0639 0.4260 0.1876 11.00000 0.05 0.14 Q8 1 0.3826 0.4370 0.2286 11.00000 0.05 0.14 Q9 1 0.0102 0.9373 0.0225 11.00000 0.05 0.14 Q10 1 -0.0327 0.5972 -0.0008 11.00000 0.05 0.14 Q11 1 -0.1596 0.5740 0.0901 11.00000 0.05 0.13 Q12 1 0.1588 0.7942 0.0378 11.00000 0.05 0.12 Q13 1 -0.0107 0.7954 0.1775 11.00000 0.05 0.12 Q14 1 0.4860 0.2573 0.0003 11.00000 0.05 0.12 Q15 1 0.3604 0.3477 0.0868 11.00000 0.05 0.12 Q16 1 0.0225 0.0464 0.1603 11.00000 0.05 0.12 Q17 1 0.4123 0.4977 -0.0026 11.00000 0.05 0.11 Q18 1 0.4854 0.4725 0.1429 11.00000 0.05 0.11 Q19 1 0.4945 0.8180 0.1534 11.00000 0.05 0.11 Q20 1 -0.0019 0.7348 -0.0115 11.00000 0.05 0.11 ; _shelx_res_checksum 48793 loop_ _space_group_symop_operation_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp C1 C 0.130(2) 0.5602(11) 0.2179(12) 0.0370(15) Uiso 1 1 d . U H1 H -0.0791 0.5463 0.2112 0.044 Uiso 1 1 calc R U C2 C 0.229(2) 0.7074(13) 0.1779(10) 0.0370(15) Uiso 1 1 d . U H2 H 0.1210 0.7993 0.1974 0.044 Uiso 1 1 calc R U C3 C 0.165(2) 0.6840(12) 0.0921(11) 0.0370(15) Uiso 1 1 d . U H3 H -0.0435 0.6692 0.0853 0.044 Uiso 1 1 calc R U C4 C 0.319(2) 0.5377(12) 0.0639(12) 0.0370(15) Uiso 1 1 d . U H4 H 0.5266 0.5520 0.0729 0.044 Uiso 1 1 calc R U C5 C 0.223(2) 0.3963(12) 0.1076(11) 0.0370(15) Uiso 1 1 d . U H5 H 0.0135 0.3846 0.1010 0.044 Uiso 1 1 calc R U C6 C 0.3634(19) 0.2453(10) 0.0860(9) 0.0370(15) Uiso 1 1 d . U H6 H 0.3085 0.2191 0.0334 0.044 Uiso 1 1 calc R U H7 H 0.5716 0.2604 0.0867 0.044 Uiso 1 1 calc R U O1 O 0.2009(14) 0.5670(7) 0.2982(7) 0.051(3) Uiso 1 1 d . . H8 H 0.3648 0.6028 0.3034 0.077 Uiso 1 1 calc R U O2 O 0.5282(13) 0.7336(8) 0.1857(6) 0.048(3) Uiso 1 1 d . . H9 H 0.5572 0.7961 0.2212 0.072 Uiso 1 1 calc R U O3 O 0.2555(14) 0.8171(7) 0.0471(5) 0.038(2) Uiso 1 1 d . . H10 H 0.1143 0.8569 0.0259 0.057 Uiso 1 1 calc R U O4 O 0.2766(15) 0.5054(9) -0.0165(6) 0.049(2) Uiso 1 1 d . . H11 H 0.1337 0.5536 -0.0320 0.074 Uiso 1 1 calc R U O5 O 0.2837(13) 0.4203(7) 0.1900(6) 0.037(2) Uiso 1 1 d . . O6 O 0.2924(15) 0.1117(8) 0.1355(6) 0.047(3) Uiso 1 1 d . . H12 H 0.1161 0.1043 0.1394 0.071 Uiso 1 1 calc R U loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O1 C1 O5 104.1(10) O1 C1 C2 110.4(10) O5 C1 C2 111.7(11) O2 C2 C1 112.6(10) O2 C2 C3 107.6(10) C1 C2 C3 106.6(11) O3 C3 C4 109.3(11) O3 C3 C2 111.9(10) C4 C3 C2 109.3(11) O4 C4 C5 107.6(11) O4 C4 C3 114.0(12) C5 C4 C3 110.7(13) O5 C5 C6 106.3(11) O5 C5 C4 109.2(12) C6 C5 C4 115.7(12) O6 C6 C5 114.8(11) C1 O5 C5 109.9(10) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 O1 1.428(19) C1 O5 1.458(12) C1 C2 1.492(17) C2 O2 1.408(10) C2 C3 1.53(2) C3 O3 1.427(14) C3 C4 1.502(14) C4 O4 1.430(19) C4 C5 1.478(18) C5 O5 1.466(19) C5 C6 1.476(13) C6 O6 1.451(12)