#------------------------------------------------------------------------------ #$Date: 2016-05-06 05:19:40 +0300 (Fri, 06 May 2016) $ #$Revision: 182798 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/22/48/7224886.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7224886 loop_ _publ_author_name 'Patyk, Ewa' 'Jenczak, Anna' 'Katrusiak, Andrzej' _publ_section_title ; Giant strain geared to transformable H-bonded network in compressed \b-d-mannose. ; _journal_issue 16 _journal_name_full 'Physical chemistry chemical physics : PCCP' _journal_page_first 11474 _journal_page_last 11479 _journal_paper_doi 10.1039/c6cp01286h _journal_volume 18 _journal_year 2016 _chemical_absolute_configuration rm _chemical_formula_moiety 'C6 H12 O6' _chemical_formula_sum 'C6 H12 O6' _chemical_formula_weight 180.16 _chemical_melting_point 400 _chemical_name_common \b-D-mannose _chemical_name_systematic \b-D-mannopyranose _space_group_crystal_system orthorhombic _space_group_IT_number 19 _space_group_name_Hall 'P 2ac 2ab' _space_group_name_H-M_alt 'P 21 21 21' _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _audit_creation_method SHELXL-2014/7 _audit_update_record ; 2016-02-04 deposited with the CCDC. 2016-04-08 downloaded from the CCDC. ; _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 5.6684(2) _cell_length_b 7.5720(2) _cell_length_c 18.1425(5) _cell_measurement_reflns_used 2899 _cell_measurement_temperature 295(2) _cell_measurement_theta_max 73.2260 _cell_measurement_theta_min 4.8690 _cell_volume 778.70(4) _computing_cell_refinement 'CrysAlisPro, Agilent Technologies,Version 1.171.37.31' _computing_data_collection 'CrysAlisPro, Agilent Technologies,Version 1.171.37.31' _computing_data_reduction 'CrysAlisPro, Agilent Technologies,Version 1.171.37.31' _computing_structure_refinement 'SHELXL-2014/7 (Sheldrick, 2014)' _computing_structure_solution 'ShelXS (Sheldrick, 2008)' _diffrn_ambient_temperature 295(2) _diffrn_detector_area_resol_mean 5.2679 _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.992 _diffrn_measurement_device_type 'SuperNova, Single source at offset, Atlas' _diffrn_measurement_method '\w scans' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54184 _diffrn_reflns_av_R_equivalents 0.0268 _diffrn_reflns_av_unetI/netI 0.0235 _diffrn_reflns_Laue_measured_fraction_full 0.998 _diffrn_reflns_Laue_measured_fraction_max 0.992 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 8 _diffrn_reflns_limit_k_min -9 _diffrn_reflns_limit_l_max 22 _diffrn_reflns_limit_l_min -21 _diffrn_reflns_number 5200 _diffrn_reflns_point_group_measured_fraction_full 0.996 _diffrn_reflns_point_group_measured_fraction_max 0.982 _diffrn_reflns_theta_full 67.684 _diffrn_reflns_theta_max 73.659 _diffrn_reflns_theta_min 4.875 _diffrn_source 'sealed X-ray tube' _exptl_absorpt_coefficient_mu 1.218 _exptl_absorpt_correction_T_max 1.00000 _exptl_absorpt_correction_T_min 0.88764 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; CrysAlisPro, Agilent Technologies, Version 1.171.37.31 (release 14-01-2014 CrysAlis171 .NET) (compiled Jan 14 2014,18:38:05) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. ; _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.537 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 384 _exptl_crystal_size_max 0.23 _exptl_crystal_size_mid 0.10 _exptl_crystal_size_min 0.08 _refine_diff_density_max 0.121 _refine_diff_density_min -0.163 _refine_diff_density_rms 0.034 _refine_ls_abs_structure_details ; Flack x determined using 511 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259). ; _refine_ls_abs_structure_Flack -0.44(15) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.055 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 109 _refine_ls_number_reflns 1541 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.055 _refine_ls_R_factor_all 0.0354 _refine_ls_R_factor_gt 0.0319 _refine_ls_shift/su_max 0.039 _refine_ls_shift/su_mean 0.005 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0359P)^2^+0.1324P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0760 _refine_ls_wR_factor_ref 0.0782 _reflns_Friedel_coverage 0.641 _reflns_Friedel_fraction_full 0.993 _reflns_Friedel_fraction_max 0.966 _reflns_number_gt 1434 _reflns_number_total 1541 _reflns_threshold_expression 'I > 2\s(I)' _cod_data_source_file c6cp01286h6.cif _cod_data_source_block bman_295K _cod_depositor_comments 'Adding full bibliography for 7224879--7224889.cif.' _cod_original_cell_volume 778.69(4) _cod_database_code 7224886 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_res_file ; bman0.res created by SHELXL-2014/7 TITL man2_4_295_00 in P2(1)2(1)2(1) REM P2(1)2(1)2(1) (#19 in standard setting) CELL 1.54184 5.668395 7.571957 18.142457 90 90 90 ZERR 4 0.000199 0.000216 0.000509 0 0 0 LATT -1 SYMM 0.5-X,-Y,0.5+Z SYMM -X,0.5+Y,0.5-Z SYMM 0.5+X,0.5-Y,-Z SFAC C H O UNIT 24 48 24 EQIV $1 1-X,-0.5+Y,0.5-Z EQIV $2 -0.5+X,1.5-Y,-Z EQIV $3 +X,1+Y,+Z EQIV $4 +X,-1+Y,+Z EQIV $5 -1+X,+Y,+Z EQIV $6 -X,0.5+Y,0.5-Z EQIV $7 -0.5+X,0.5-Y,-Z EQIV $8 1-X,0.5+Y,0.5-Z EQIV $9 0.5+X,1.5-Y,-Z EQIV $10 0.5+X,0.5-Y,-Z EQIV $11 -X,-0.5+Y,0.5-Z L.S. 1 PLAN 10 TEMP 21.85 RTAB oho1 O1 O3_$1 RTAB oho1 H8 O3_$1 RTAB oho1 O1 H8 O3_$1 RTAB oho1 C1 O1 O3_$1 RTAB oho1 O1 O3_$1 C3_$1 RTAB oho2 O1 O6_$8 RTAB oho2 H8 O6_$8 RTAB oho2 O1 H8 O6_$8 RTAB oho2 C1 O1 O6_$8 RTAB oho2 O1 O6_$8 C6_$8 RTAB oho3 O2 O5_$8 RTAB oho3 H9 O5_$8 RTAB oho3 O2 H9 O5_$8 RTAB oho3 C2 O2 O5_$8 RTAB oho4 O2 O1_$8 RTAB oho4 H9 O1_$8 RTAB oho4 O2 H9 O1_$8 RTAB oho4 C2 O2 O1_$8 RTAB oho4 O2 O1_$8 C1_$8 RTAB oho5 O3 O4_$9 RTAB oho5 H10 O4_$9 RTAB oho5 O3 H10 O4_$9 RTAB oho5 C3 O3 O4_$9 RTAB oho5 O3 O4_$9 C4_$9 RTAB oho6 O3 O4_$2 RTAB oho6 H10 O4_$2 RTAB oho6 O3 H10 O4_$2 RTAB oho6 C3 O3 O4_$2 RTAB oho6 O3 O4_$2 C4_$2 RTAB oho7 O3 O3_$2 RTAB oho7 H10 O3_$2 RTAB oho7 O3 H10 O3_$2 RTAB oho7 C3 O3 O3_$2 RTAB oho7 O3 O3_$2 C3_$2 RTAB oo1 O3 O6_$3 RTAB oo1 H10 O6_$3 RTAB oo1 O3 H10 O6_$3 RTAB oo1 C3 O3 O6_$3 RTAB oo1 O3 O6_$3 C6_$3 RTAB oho8 O4 O6_$10 RTAB oho8 H11 O6_$10 RTAB oho8 O4 H11 O6_$10 RTAB oho8 C4 O4 O6_$10 RTAB oho8 O4 O6_$10 C6_$10 RTAB oho9 O4 O3_$2 RTAB oho9 H11 O3_$2 RTAB oho9 O4 H11 O3_$2 RTAB oho9 C4 O4 O3_$2 RTAB oho9 O4 O3_$2 C3_$2 RTAB oh10 O6 O1_$11 RTAB oh10 H12 O1_$11 RTAB oh10 O6 H12 O1_$11 RTAB oh10 C6 O6 O1_$11 RTAB oh10 O6 O1_$11 C1_$11 RTAB oo2 O6 O3_$4 RTAB oo2 H12 O3_$4 RTAB oo2 O6 H12 O3_$4 RTAB oo2 C6 O6 O3_$4 RTAB oo2 O6 O3_$4 C3_$4 RTAB cho1 C1 O2_$5 RTAB cho1 H1 O2_$5 RTAB cho1 C1 H1 O2_$5 RTAB cho1 C1 O2_$5 C2_$5 RTAB cho2 C2 O1_$6 RTAB cho2 H2 O1_$6 RTAB cho2 C2 H2 O1_$6 RTAB cho2 C2 O1_$6 C1_$6 RTAB cho3 C2 O2_$5 RTAB cho3 H2 O2_$5 RTAB cho3 C2 H2 O2_$5 RTAB cho3 C2 O2_$5 C2_$5 RTAB cho4 C2 O2_$8 RTAB cho4 H2 O2_$8 RTAB cho4 C2 H2 O2_$8 RTAB cho4 C2 O2_$8 C2_$8 RTAB cho5 C2 O5_$6 RTAB cho5 H2 O5_$6 RTAB cho5 C2 H2 O5_$6 RTAB cho6 C3 O2_$5 RTAB cho6 H3 O2_$5 RTAB cho6 C3 H3 O2_$5 RTAB cho6 C3 O2_$5 C2_$5 RTAB cho7 C3 O3_$2 RTAB cho7 H3 O3_$2 RTAB cho7 C3 H3 O3_$2 RTAB cho7 C3 O3_$2 C3_$2 RTAB cho8 C3 O4_$2 RTAB cho8 H3 O4_$2 RTAB cho8 C3 H3 O4_$2 RTAB cho8 C3 O4_$2 C4_$2 RTAB cho9 C3 O6_$3 RTAB cho9 H3 O6_$3 RTAB cho9 C3 H3 O6_$3 RTAB cho9 C3 O6_$3 C6_$3 RTAB ch10 C4 O3_$9 RTAB ch10 H4 O3_$9 RTAB ch10 C4 H4 O3_$9 RTAB ch10 C4 O3_$9 C3_$9 RTAB ch11 C6 O6_$10 RTAB ch11 H6 O6_$10 RTAB ch11 C6 H6 O6_$10 RTAB ch11 C6 O6_$10 C6_$10 RTAB ch12 C6 O3_$4 RTAB ch12 H7 O3_$4 RTAB ch12 C6 H7 O3_$4 RTAB ch12 C6 O3_$4 C3_$4 RTAB hh1 H1 H9_$5 RTAB hh2 H3 H4_$5 RTAB hh3 H3 H10_$2 RTAB hh4 H3 H11_$2 RTAB hh5 H4 H10_$9 RTAB hh6 H5 H7_$5 RTAB hh7 H6 H7_$7 RTAB hh8 H7 H8_$1 RTAB hh9 H8 H9_$1 RTAB hh10 H8 H12_$6 RTAB hh11 H10 H11_$9 RTAB hh12 H10 H11_$2 RTAB hh13 H11 H12_$10 BOND fmap 2 acta REM REM REM WGHT 0.035900 0.132400 FVAR 10.66016 C1 1 0.148853 0.578067 0.218569 11.00000 0.03596 0.03274 = 0.02397 -0.00207 0.00125 0.00524 AFIX 13 H1 2 0.001931 0.627272 0.198848 11.00000 -1.20000 AFIX 0 C2 1 0.346506 0.710817 0.207603 11.00000 0.03905 0.02678 = 0.02675 -0.00280 0.00074 0.00456 AFIX 13 H2 2 0.304928 0.822143 0.231898 11.00000 -1.20000 AFIX 0 C3 1 0.380298 0.742961 0.125470 11.00000 0.04231 0.02430 = 0.02853 0.00021 0.00089 -0.00178 AFIX 13 H3 2 0.237732 0.800215 0.106424 11.00000 -1.20000 AFIX 0 C4 1 0.416589 0.572353 0.083490 11.00000 0.03810 0.02634 = 0.02182 -0.00113 0.00117 -0.00012 AFIX 13 H4 2 0.570171 0.521373 0.096240 11.00000 -1.20000 AFIX 0 C5 1 0.220756 0.441170 0.101869 11.00000 0.03738 0.03099 = 0.02349 -0.00134 -0.00224 -0.00230 AFIX 13 H5 2 0.070271 0.485649 0.082828 11.00000 -1.20000 AFIX 0 C6 1 0.267851 0.260301 0.070316 11.00000 0.05908 0.03062 = 0.03122 -0.00460 0.00738 -0.00888 AFIX 23 H6 2 0.301345 0.270980 0.018075 11.00000 -1.20000 H7 2 0.405860 0.210176 0.094016 11.00000 -1.20000 AFIX 0 O1 3 0.114912 0.531900 0.291722 11.00000 0.04385 0.04584 = 0.02584 0.00168 0.00568 0.00566 AFIX 83 H8 2 0.234306 0.484024 0.307599 11.00000 -1.50000 AFIX 0 O2 3 0.553057 0.639949 0.240680 11.00000 0.04072 0.03727 = 0.03556 -0.00087 -0.00744 -0.00196 AFIX 83 H9 2 0.622277 0.718066 0.263311 11.00000 -1.50000 AFIX 0 O3 3 0.573613 0.860291 0.115107 11.00000 0.06859 0.04072 = 0.03019 -0.00569 0.00829 -0.02355 AFIX 83 H10 2 0.593289 0.877538 0.070912 11.00000 -1.50000 AFIX 0 O4 3 0.411980 0.616688 0.006898 11.00000 0.05786 0.03126 = 0.02341 -0.00053 0.00383 0.00165 AFIX 83 H11 2 0.471659 0.536437 -0.017047 11.00000 -1.50000 AFIX 0 O5 3 0.203299 0.417157 0.180123 11.00000 0.04433 0.02783 = 0.02296 -0.00054 0.00170 -0.00221 O6 3 0.073643 0.145480 0.080393 11.00000 0.08255 0.04367 = 0.02594 -0.00343 0.00221 -0.03049 AFIX 83 H12 2 0.051019 0.130458 0.124593 11.00000 -1.50000 AFIX 0 HKLF 4 REM man2_4_295_00 in P2(1)2(1)2(1) REM R1 = 0.0319 for 1434 Fo > 4sig(Fo) and 0.0354 for all 1541 data REM 109 parameters refined using 0 restraints END WGHT 0.0359 0.1324 REM Highest difference peak 0.121, deepest hole -0.163, 1-sigma level 0.034 Q1 1 0.2577 0.6422 0.2170 11.00000 0.05 0.12 Q2 1 0.2185 0.2918 0.0152 11.00000 0.05 0.11 Q3 1 0.6883 0.7741 0.1192 11.00000 0.05 0.11 Q4 1 0.1355 0.6108 0.0199 11.00000 0.05 0.11 Q5 1 0.6354 0.8381 0.0668 11.00000 0.05 0.11 Q6 1 0.4037 0.6644 0.1026 11.00000 0.05 0.10 Q7 1 0.3207 0.5108 0.0937 11.00000 0.05 0.10 Q8 1 0.7146 0.5004 0.0954 11.00000 0.05 0.10 Q9 1 0.1740 0.4999 0.1999 11.00000 0.05 0.09 Q10 1 -0.0803 0.3944 0.1791 11.00000 0.05 0.09 ; _shelx_res_checksum 16069 loop_ _space_group_symop_operation_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp C1 C 0.1489(4) 0.5781(3) 0.21857(12) 0.0309(5) Uani 1 1 d . . H1 H 0.0019 0.6273 0.1988 0.037 Uiso 1 1 calc R U C2 C 0.3465(4) 0.7108(3) 0.20760(12) 0.0309(5) Uani 1 1 d . . H2 H 0.3049 0.8221 0.2319 0.037 Uiso 1 1 calc R U C3 C 0.3803(5) 0.7430(3) 0.12547(12) 0.0317(5) Uani 1 1 d . . H3 H 0.2377 0.8002 0.1064 0.038 Uiso 1 1 calc R U C4 C 0.4166(4) 0.5724(3) 0.08349(11) 0.0288(5) Uani 1 1 d . . H4 H 0.5702 0.5214 0.0962 0.035 Uiso 1 1 calc R U C5 C 0.2208(4) 0.4412(3) 0.10187(11) 0.0306(5) Uani 1 1 d . . H5 H 0.0703 0.4856 0.0828 0.037 Uiso 1 1 calc R U C6 C 0.2679(5) 0.2603(3) 0.07032(13) 0.0403(6) Uani 1 1 d . . H6A H 0.3013 0.2710 0.0181 0.048 Uiso 1 1 calc R U H6B H 0.4059 0.2102 0.0940 0.048 Uiso 1 1 calc R U O1 O 0.1149(3) 0.5319(2) 0.29172(8) 0.0385(4) Uani 1 1 d . . H1A H 0.2343 0.4840 0.3076 0.058 Uiso 1 1 calc R U O2 O 0.5531(3) 0.6399(2) 0.24068(9) 0.0378(4) Uani 1 1 d . . H2A H 0.6223 0.7181 0.2633 0.057 Uiso 1 1 calc R U O3 O 0.5736(4) 0.8603(2) 0.11511(9) 0.0465(5) Uani 1 1 d . . H3A H 0.5933 0.8775 0.0709 0.070 Uiso 1 1 calc R U O4 O 0.4120(3) 0.6167(2) 0.00690(8) 0.0375(4) Uani 1 1 d . . H4A H 0.4717 0.5364 -0.0170 0.056 Uiso 1 1 calc R U O5 O 0.2033(3) 0.41716(19) 0.18012(8) 0.0317(4) Uani 1 1 d . . O6 O 0.0736(4) 0.1455(2) 0.08039(9) 0.0507(5) Uani 1 1 d . . H6 H 0.0510 0.1305 0.1246 0.076 Uiso 1 1 calc R U loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.0360(12) 0.0327(11) 0.0240(10) -0.0021(9) 0.0012(9) 0.0052(9) C2 0.0390(13) 0.0268(10) 0.0268(11) -0.0028(9) 0.0007(9) 0.0046(9) C3 0.0423(13) 0.0243(10) 0.0285(11) 0.0002(8) 0.0009(10) -0.0018(10) C4 0.0381(12) 0.0263(10) 0.0218(10) -0.0011(8) 0.0012(9) -0.0001(10) C5 0.0374(12) 0.0310(11) 0.0235(11) -0.0013(9) -0.0022(9) -0.0023(10) C6 0.0591(17) 0.0306(12) 0.0312(13) -0.0046(10) 0.0074(12) -0.0089(11) O1 0.0438(9) 0.0458(9) 0.0258(8) 0.0017(7) 0.0057(7) 0.0057(8) O2 0.0407(10) 0.0373(9) 0.0356(9) -0.0009(7) -0.0074(8) -0.0020(8) O3 0.0686(12) 0.0407(9) 0.0302(8) -0.0057(7) 0.0083(8) -0.0236(10) O4 0.0579(11) 0.0313(8) 0.0234(8) -0.0005(6) 0.0038(8) 0.0017(8) O5 0.0443(9) 0.0278(8) 0.0230(7) -0.0005(6) 0.0017(6) -0.0022(7) O6 0.0825(14) 0.0437(10) 0.0259(8) -0.0034(7) 0.0022(9) -0.0305(11) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O1 C1 O5 106.30(18) O1 C1 C2 113.26(18) O5 C1 C2 109.82(17) O2 C2 C1 107.62(17) O2 C2 C3 111.73(18) C1 C2 C3 109.09(18) O3 C3 C4 111.20(19) O3 C3 C2 109.03(18) C4 C3 C2 111.92(18) O4 C4 C3 106.63(17) O4 C4 C5 110.60(17) C3 C4 C5 110.28(18) O5 C5 C6 105.83(18) O5 C5 C4 110.41(17) C6 C5 C4 112.3(2) O6 C6 C5 111.8(2) C5 O5 C1 112.80(16) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 O1 1.386(3) C1 O5 1.437(3) C1 C2 1.518(3) C2 O2 1.421(3) C2 C3 1.522(3) C3 O3 1.423(3) C3 C4 1.514(3) C4 O4 1.430(2) C4 C5 1.526(3) C5 O5 1.435(2) C5 C6 1.508(3) C6 O6 1.415(3)