#------------------------------------------------------------------------------ #$Date: 2016-05-06 05:19:40 +0300 (Fri, 06 May 2016) $ #$Revision: 182798 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/22/48/7224888.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7224888 loop_ _publ_author_name 'Patyk, Ewa' 'Jenczak, Anna' 'Katrusiak, Andrzej' _publ_section_title ; Giant strain geared to transformable H-bonded network in compressed \b-d-mannose. ; _journal_issue 16 _journal_name_full 'Physical chemistry chemical physics : PCCP' _journal_page_first 11474 _journal_page_last 11479 _journal_paper_doi 10.1039/c6cp01286h _journal_volume 18 _journal_year 2016 _chemical_absolute_configuration rm _chemical_formula_moiety 'C6 H12 O6' _chemical_formula_sum 'C6 H12 O6' _chemical_formula_weight 180.16 _chemical_melting_point 400 _chemical_name_common \b-D-mannose _chemical_name_systematic \b-D-mannopyranose _space_group_crystal_system orthorhombic _space_group_IT_number 19 _space_group_name_Hall 'P 2ac 2ab' _space_group_name_H-M_alt 'P 21 21 21' _symmetry_space_group_name_Hall 'P 2ac 2ab' _symmetry_space_group_name_H-M 'P 21 21 21' _atom_sites_solution_hydrogens geom _audit_creation_method SHELXL-2014/7 _audit_update_record ; 2016-02-04 deposited with the CCDC. 2016-04-08 downloaded from the CCDC. ; _cell_angle_alpha 90 _cell_angle_beta 90 _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 5.64474(13) _cell_length_b 7.55135(17) _cell_length_c 18.1054(4) _cell_measurement_reflns_used 3797 _cell_measurement_temperature 200(2) _cell_measurement_theta_max 73.6248 _cell_measurement_theta_min 2.4383 _cell_volume 771.75(3) _computing_cell_refinement 'CrysAlisPro, Agilent Technologies,Version 1.171.36.21t' _computing_data_collection 'CrysAlisPro, Agilent Technologies,Version 1.171.36.21t' _computing_data_reduction 'CrysAlisPro, Agilent Technologies,Version 1.171.36.21t' _computing_structure_refinement 'SHELXL-2014/7 (Sheldrick, 2014)' _computing_structure_solution 'ShelXS (Sheldrick, 2008)' _diffrn_ambient_temperature 200(2) _diffrn_detector_area_resol_mean 5.2679 _diffrn_measured_fraction_theta_full 0.998 _diffrn_measured_fraction_theta_max 0.994 _diffrn_measurement_device_type 'SuperNova, Single source at offset, Atlas' _diffrn_measurement_method '\w scans' _diffrn_radiation_type CuK\a _diffrn_radiation_wavelength 1.54184 _diffrn_reflns_av_R_equivalents 0.0238 _diffrn_reflns_av_unetI/netI 0.0203 _diffrn_reflns_Laue_measured_fraction_full 0.998 _diffrn_reflns_Laue_measured_fraction_max 0.994 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 9 _diffrn_reflns_limit_k_min -8 _diffrn_reflns_limit_l_max 21 _diffrn_reflns_limit_l_min -22 _diffrn_reflns_number 5239 _diffrn_reflns_point_group_measured_fraction_full 0.996 _diffrn_reflns_point_group_measured_fraction_max 0.985 _diffrn_reflns_theta_full 67.684 _diffrn_reflns_theta_max 73.787 _diffrn_reflns_theta_min 4.885 _diffrn_source 'sealed X-ray tube' _exptl_absorpt_coefficient_mu 1.229 _exptl_absorpt_correction_T_max 1.00000 _exptl_absorpt_correction_T_min 0.88512 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details ; CrysAlisPro, Agilent Technologies, Version 1.171.36.21t (release 14-08-2012 CrysAlis171 .NET) (compiled Aug 14 2012,18:12:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. ; _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.551 _exptl_crystal_density_method 'not measured' _exptl_crystal_description plate _exptl_crystal_F_000 384 _exptl_crystal_size_max 0.23 _exptl_crystal_size_mid 0.10 _exptl_crystal_size_min 0.08 _refine_diff_density_max 0.194 _refine_diff_density_min -0.258 _refine_diff_density_rms 0.036 _refine_ls_abs_structure_details ; Flack x determined using 566 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259). ; _refine_ls_abs_structure_Flack 0.00(12) _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 1.085 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 109 _refine_ls_number_reflns 1532 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.085 _refine_ls_R_factor_all 0.0293 _refine_ls_R_factor_gt 0.0283 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.0335P)^2^+0.1831P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0716 _refine_ls_wR_factor_ref 0.0723 _reflns_Friedel_coverage 0.642 _reflns_Friedel_fraction_full 0.993 _reflns_Friedel_fraction_max 0.972 _reflns_number_gt 1483 _reflns_number_total 1532 _reflns_threshold_expression 'I > 2\s(I)' _cod_data_source_file c6cp01286h6.cif _cod_data_source_block bman_200K _cod_depositor_comments 'Adding full bibliography for 7224879--7224889.cif.' _cod_database_code 7224888 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_res_file ; 200.res created by SHELXL-2014/7 TITL man2_2_200_00 in P2(1)2(1)2(1) REM P2(1)2(1)2(1) (#19 in standard setting) CELL 1.54184 5.644741 7.551346 18.105427 90.0000 90.0000 90.0000 ZERR 4.00 0.000130 0.000171 0.000401 0.0000 0.0000 0.0000 LATT -1 SYMM -x+1/2,-y, z+1/2 SYMM -x, y+1/2,-z+1/2 SYMM x+1/2,-y+1/2,-z SFAC C H O UNIT 24.00 48.00 24.00 L.S. 100 BOND FMAP 2 PLAN 10 ACTA EQIV $1 1-X, -0.5+Y, 0.5-Z EQIV $2 1-X, 0.5+Y, 0.5-Z EQIV $3 0.5+X, 1.5-Y, -Z EQIV $4 0.5+X, 0.5-Y, -Z EQIV $5 -X, -0.5+Y, 0.5-Z EQIV $6 -1+X, Y, Z RTAB OHO1 O1 O3_$1 RTAB OHO1 H8 O3_$1 RTAB OHO1 O1 H8 O3_$1 RTAB OHO1 C1 O1 O3_$1 RTAB OHO1 O1 O3_$1 C3_$1 RTAB OHO2 O2 O5_$2 RTAB OHO2 H9 O5_$2 RTAB OHO2 O2 H9 O5_$2 RTAB OHO2 C2 O2 O5_$2 RTAB OHO3 O3 O4_$3 RTAB OHO3 H10 O4_$3 RTAB OHO3 O3 H10 O4_$3 RTAB OHO3 C3 O3 O4_$3 RTAB OHO3 O3 O4_$3 C4_$3 RTAB OHO4 O4 O6_$4 RTAB OHO4 H11 O6_$4 RTAB OHO4 O4 H11 O6_$4 RTAB OHO4 C4 O4 O6_$4 RTAB OHO4 O4 O6_$4 C6_$4 RTAB OHO5 O6 O1_$5 RTAB OHO5 H12 O1_$5 RTAB OHO5 O6 H12 O1_$5 RTAB OHO5 C6 O6 O1_$5 RTAB OHO5 O6 O1_$5 C1_$5 RTAB CHO1 C6 O6_$4 RTAB CHO1 H6 O6_$4 RTAB CHO1 C6 H6 O6_$4 RTAB CHO1 C6 O6_$4 C6_$4 RTAB CHO2 C1 O2_$6 RTAB CHO2 H1 O2_$6 RTAB CHO2 C1 H1 O2_$6 RTAB CHO2 C1 O2_$6 C2_$6 RTAB CHO3 C2 O2_$2 RTAB CHO3 H2 O2_$2 RTAB CHO3 C2 H2 O2_$2 RTAB CHO3 C2 O2_$2 C2_$2 WGHT 0.033500 0.183100 FVAR 10.74866 C1 1 0.147765 0.577640 0.218633 11.00000 0.02282 0.02257 = 0.01773 -0.00107 0.00106 0.00295 AFIX 13 H1 2 0.000088 0.626649 0.198830 11.00000 -1.20000 AFIX 0 C2 1 0.346104 0.711479 0.207838 11.00000 0.02503 0.01844 = 0.01822 -0.00252 -0.00076 0.00272 AFIX 13 H2 2 0.303933 0.822733 0.232411 11.00000 -1.20000 AFIX 0 C3 1 0.378787 0.744724 0.125484 11.00000 0.02534 0.01593 = 0.02115 0.00036 -0.00010 -0.00155 AFIX 13 H3 2 0.234909 0.801432 0.106557 11.00000 -1.20000 AFIX 0 C4 1 0.417136 0.573886 0.083248 11.00000 0.02310 0.01877 = 0.01522 -0.00043 0.00007 0.00009 AFIX 13 H4 2 0.571838 0.523471 0.095950 11.00000 -1.20000 AFIX 0 C5 1 0.221059 0.441344 0.101646 11.00000 0.02392 0.02144 = 0.01680 -0.00017 -0.00157 -0.00133 AFIX 13 H5 2 0.069632 0.485432 0.082598 11.00000 -1.20000 AFIX 0 C6 1 0.269657 0.260518 0.069883 11.00000 0.03826 0.02050 = 0.02128 -0.00313 0.00560 -0.00636 AFIX 23 H6 2 0.302212 0.271620 0.017483 11.00000 -1.20000 H7 2 0.409278 0.211093 0.093346 11.00000 -1.20000 AFIX 0 O1 3 0.113627 0.530853 0.292018 11.00000 0.02706 0.03171 = 0.01751 0.00098 0.00359 0.00420 AFIX 83 H8 2 0.233778 0.483241 0.307945 11.00000 -1.50000 AFIX 0 O2 3 0.554215 0.640634 0.240813 11.00000 0.02581 0.02503 = 0.02460 -0.00038 -0.00540 -0.00114 AFIX 83 H9 2 0.623673 0.719032 0.263465 11.00000 -1.50000 AFIX 0 O3 3 0.572182 0.863341 0.115054 11.00000 0.04401 0.02694 = 0.02157 -0.00323 0.00548 -0.01591 AFIX 83 H10 2 0.583973 0.887951 0.071095 11.00000 -1.50000 AFIX 0 O4 3 0.411362 0.618373 0.006502 11.00000 0.03708 0.02108 = 0.01594 -0.00069 0.00270 0.00112 AFIX 83 H11 2 0.462366 0.535060 -0.017807 11.00000 -1.50000 AFIX 0 O5 3 0.203558 0.416566 0.180068 11.00000 0.02771 0.01843 = 0.01606 -0.00046 0.00157 -0.00108 O6 3 0.075594 0.143520 0.080267 11.00000 0.05449 0.02921 = 0.01763 -0.00228 0.00112 -0.02011 AFIX 83 H12 2 0.041776 0.139147 0.124275 11.00000 -1.50000 AFIX 0 HKLF 4 REM man2_2_200_00 in P2(1)2(1)2(1) REM R1 = 0.0283 for 1483 Fo > 4sig(Fo) and 0.0293 for all 1532 data REM 109 parameters refined using 0 restraints END WGHT 0.0335 0.1832 REM Highest difference peak 0.194, deepest hole -0.258, 1-sigma level 0.036 Q1 1 0.6546 0.8318 0.0686 11.00000 0.05 0.19 Q2 1 0.3575 0.7262 0.1640 11.00000 0.05 0.15 Q3 1 0.2495 0.6434 0.2138 11.00000 0.05 0.14 Q4 1 0.3997 0.6585 0.1083 11.00000 0.05 0.13 Q5 1 0.3157 0.5199 0.0916 11.00000 0.05 0.13 Q6 1 0.6927 0.7822 0.1174 11.00000 0.05 0.12 Q7 1 0.1696 0.4930 0.1986 11.00000 0.05 0.11 Q8 1 0.2526 0.3604 0.0827 11.00000 0.05 0.11 Q9 1 -0.0913 0.6510 0.1828 11.00000 0.05 0.10 Q10 1 0.6174 0.9663 0.1354 11.00000 0.05 0.10 ; _shelx_res_checksum 69163 loop_ _space_group_symop_operation_xyz 'x, y, z' '-x+1/2, -y, z+1/2' '-x, y+1/2, -z+1/2' 'x+1/2, -y+1/2, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp C1 C 0.1478(3) 0.5776(3) 0.21863(10) 0.0210(4) Uani 1 1 d . . H1 H 0.0001 0.6266 0.1988 0.025 Uiso 1 1 calc R U C2 C 0.3461(3) 0.7115(3) 0.20784(11) 0.0206(4) Uani 1 1 d . . H2 H 0.3039 0.8227 0.2324 0.025 Uiso 1 1 calc R U C3 C 0.3788(4) 0.7447(3) 0.12548(11) 0.0208(4) Uani 1 1 d . . H3 H 0.2349 0.8014 0.1066 0.025 Uiso 1 1 calc R U C4 C 0.4171(4) 0.5739(2) 0.08325(10) 0.0190(4) Uani 1 1 d . . H4 H 0.5718 0.5235 0.0960 0.023 Uiso 1 1 calc R U C5 C 0.2211(4) 0.4413(3) 0.10165(10) 0.0207(4) Uani 1 1 d . . H5 H 0.0696 0.4854 0.0826 0.025 Uiso 1 1 calc R U C6 C 0.2697(4) 0.2605(3) 0.06988(11) 0.0267(5) Uani 1 1 d . . H6 H 0.3022 0.2716 0.0175 0.032 Uiso 1 1 calc R U H7 H 0.4093 0.2111 0.0933 0.032 Uiso 1 1 calc R U O1 O 0.1136(3) 0.5309(2) 0.29202(7) 0.0254(3) Uani 1 1 d . . H8 H 0.2338 0.4832 0.3079 0.038 Uiso 1 1 calc R U O2 O 0.5542(2) 0.64063(19) 0.24081(8) 0.0251(3) Uani 1 1 d . . H9 H 0.6237 0.7190 0.2635 0.038 Uiso 1 1 calc R U O3 O 0.5722(3) 0.8633(2) 0.11505(8) 0.0308(4) Uani 1 1 d . . H10 H 0.5840 0.8880 0.0711 0.046 Uiso 1 1 calc R U O4 O 0.4114(3) 0.61837(18) 0.00650(7) 0.0247(3) Uani 1 1 d . . H11 H 0.4624 0.5351 -0.0178 0.037 Uiso 1 1 calc R U O5 O 0.2036(3) 0.41657(17) 0.18007(7) 0.0207(3) Uani 1 1 d . . O6 O 0.0756(3) 0.14352(19) 0.08027(8) 0.0338(4) Uani 1 1 d . . H12 H 0.0418 0.1391 0.1243 0.051 Uiso 1 1 calc R U loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.0228(10) 0.0226(10) 0.0177(9) -0.0011(7) 0.0011(7) 0.0030(8) C2 0.0250(10) 0.0184(9) 0.0182(9) -0.0025(7) -0.0008(7) 0.0027(7) C3 0.0253(10) 0.0159(9) 0.0211(10) 0.0004(7) -0.0001(8) -0.0016(8) C4 0.0231(10) 0.0188(9) 0.0152(8) -0.0004(7) 0.0001(7) 0.0001(8) C5 0.0239(10) 0.0214(10) 0.0168(9) -0.0002(7) -0.0016(7) -0.0013(8) C6 0.0383(12) 0.0205(10) 0.0213(10) -0.0031(8) 0.0056(9) -0.0064(9) O1 0.0271(7) 0.0317(7) 0.0175(6) 0.0010(6) 0.0036(6) 0.0042(6) O2 0.0258(8) 0.0250(7) 0.0246(7) -0.0004(6) -0.0054(6) -0.0011(6) O3 0.0440(9) 0.0269(8) 0.0216(7) -0.0032(6) 0.0055(7) -0.0159(8) O4 0.0371(8) 0.0211(7) 0.0159(6) -0.0007(5) 0.0027(6) 0.0011(6) O5 0.0277(7) 0.0184(7) 0.0161(6) -0.0005(5) 0.0016(5) -0.0011(6) O6 0.0545(10) 0.0292(8) 0.0176(7) -0.0023(6) 0.0011(7) -0.0201(8) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0181 0.0091 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0492 0.0322 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle O1 C1 O5 106.26(15) O1 C1 C2 113.22(16) O5 C1 C2 109.79(15) O2 C2 C1 107.71(15) O2 C2 C3 111.89(16) C1 C2 C3 108.93(16) O3 C3 C4 111.03(16) O3 C3 C2 109.04(15) C4 C3 C2 111.78(16) O4 C4 C3 106.69(15) O4 C4 C5 110.43(15) C3 C4 C5 110.12(15) O5 C5 C6 105.78(15) O5 C5 C4 110.53(15) C6 C5 C4 112.23(16) O6 C6 C5 111.89(17) C5 O5 C1 112.66(14) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 O1 1.388(2) C1 O5 1.437(2) C1 C2 1.521(3) C2 O2 1.422(2) C2 C3 1.523(3) C3 O3 1.425(2) C3 C4 1.515(3) C4 O4 1.430(2) C4 C5 1.529(3) C5 O5 1.436(2) C5 C6 1.507(3) C6 O6 1.420(3)