#------------------------------------------------------------------------------ #$Date: 2016-08-07 11:31:16 +0300 (Sun, 07 Aug 2016) $ #$Revision: 185253 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/22/56/7225628.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7225628 loop_ _publ_author_name 'Losev, E. A.' 'Zakharov, B. A.' 'Boldyreva, E. V.' _publ_section_title ; Polymorphic transformations in glycine co-crystals at low temperature and high pressure: two new examples as a follow-up to a glycine--glutaric acid study ; _journal_issue 31 _journal_name_full CrystEngComm _journal_page_first 5869 _journal_paper_doi 10.1039/C6CE00561F _journal_volume 18 _journal_year 2016 _chemical_formula_moiety 'C4 H6 O6, C2 H5 N O2' _chemical_formula_sum 'C6 H11 N O8' _chemical_formula_weight 225.16 _chemical_name_common 'glycine-DL-tartaric acid (1:1)' _chemical_name_systematic 'glycine-DL-tartaric acid (1:1)' _space_group_crystal_system monoclinic _space_group_IT_number 14 _space_group_name_Hall '-P 2ybc' _space_group_name_H-M_alt 'P 1 21/c 1' _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-2014/7 _audit_update_record ; 2016-06-01 deposited with the CCDC. 2016-06-20 downloaded from the CCDC. ; _cell_angle_alpha 90 _cell_angle_beta 102.972(6) _cell_angle_gamma 90 _cell_formula_units_Z 4 _cell_length_a 4.8316(3) _cell_length_b 9.291(2) _cell_length_c 20.4354(15) _cell_measurement_pressure 100000 _cell_measurement_reflns_used 1119 _cell_measurement_temperature 293(2) _cell_measurement_theta_max 28.2292 _cell_measurement_theta_min 2.0412 _cell_volume 893.9(2) _computing_cell_refinement ; CrysAlisPro, Agilent Technologies, Version 1.171.35.21 (release 20-01-2012 CrysAlis171 .NET) (compiled Jan 23 2012,18:06:46) ; _computing_data_collection ; CrysAlisPro, Agilent Technologies, Version 1.171.35.21 (release 20-01-2012 CrysAlis171 .NET) (compiled Jan 23 2012,18:06:46) ; _computing_data_reduction ; CrysAlisPro, Agilent Technologies, Version 1.171.35.21 (release 20-01-2012 CrysAlis171 .NET) (compiled Jan 23 2012,18:06:46) ; _computing_molecular_graphics 'Mercury (Macrae et al., 2006)' _computing_publication_material ; Mercury (Macrae et al., 2006), PLATON (Spek, 2009), ; _computing_structure_refinement 'SHELXL-2014/7 (Sheldrick, 2014)' _computing_structure_solution 'SHELXS-2014/7 (Sheldrick, 2014)' _diffrn_ambient_pressure 100000 _diffrn_ambient_temperature 293(2) _diffrn_detector_area_resol_mean 10.3457 _diffrn_measured_fraction_theta_full 0.579 _diffrn_measured_fraction_theta_max 0.499 _diffrn_measurement_device_type 'Xcalibur, Ruby, Gemini' _diffrn_measurement_method \w-scan _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.1279 _diffrn_reflns_av_unetI/netI 0.1088 _diffrn_reflns_Laue_measured_fraction_full 0.579 _diffrn_reflns_Laue_measured_fraction_max 0.499 _diffrn_reflns_limit_h_max 6 _diffrn_reflns_limit_h_min -6 _diffrn_reflns_limit_k_max 7 _diffrn_reflns_limit_k_min -7 _diffrn_reflns_limit_l_max 25 _diffrn_reflns_limit_l_min -24 _diffrn_reflns_number 4635 _diffrn_reflns_point_group_measured_fraction_full 0.579 _diffrn_reflns_point_group_measured_fraction_max 0.499 _diffrn_reflns_theta_full 25.187 _diffrn_reflns_theta_max 28.229 _diffrn_reflns_theta_min 2.993 _diffrn_source 'Enhance (Mo) X-ray Source' _exptl_absorpt_coefficient_mu 0.159 _exptl_absorpt_correction_T_max 0.480 _exptl_absorpt_correction_T_min 0.396 _exptl_absorpt_correction_type gaussian _exptl_absorpt_process_details 'Absorb-7 (Angel, 2013)' _exptl_crystal_colour colourless _exptl_crystal_density_diffrn 1.673 _exptl_crystal_description block _exptl_crystal_F_000 472 _exptl_crystal_size_max 0.160 _exptl_crystal_size_mid 0.060 _exptl_crystal_size_min 0.030 _refine_diff_density_max 0.218 _refine_diff_density_min -0.283 _refine_diff_density_rms 0.060 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.930 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 136 _refine_ls_number_reflns 1108 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 0.930 _refine_ls_R_factor_all 0.1320 _refine_ls_R_factor_gt 0.0619 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'w=1/[\s^2^(Fo^2^)+(0.1000P)^2^] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1419 _refine_ls_wR_factor_ref 0.1915 _reflns_Friedel_coverage 0.000 _reflns_number_gt 585 _reflns_number_total 1108 _reflns_threshold_expression 'I > 2\s(I)' _cod_data_source_file c6ce00561f17.cif _cod_data_source_block gta010GPa _cod_depositor_comments ; The following automatic conversions were performed: '_exptl_absorpt_correction_type' value 'Gaussian' changed to 'gaussian' according to /usr/data/users/saulius/crontab/automatic-downloads/rss-feeds/RSC/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 from 2011-04-26. Automatic conversion script Id: cif_fix_values 4268 2015-11-12 08:31:59Z antanas Adding full bibliography for 7225609--7225638.cif. ; _cod_original_cell_volume 894.0(2) _cod_database_code 7225628 _shelx_shelxl_version_number 2014/7 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_estimated_absorpt_t_min 0.975 _shelx_estimated_absorpt_t_max 0.995 _shelx_res_file ; D:\Oxford_Diffraction\2014\HP\gt\0.1\abs\deposit2\depo\new.res created by SHELXL-2014/7 TITL GLYDL CELL 0.70930 4.83160 9.29140 20.43540 90.00000 102.97200 90.00000 ZERR 4 0.00030 0.00200 0.00150 0.00000 0.00600 0.00000 LATT 1 SYMM -X, Y+ 0.50000, -Z+ 0.50000 SFAC C H N O UNIT 24 44 4 32 EQIV $1 1+X,+Y,+Z EQIV $2 -X,-Y,1-Z EQIV $3 -1-X,1-Y,1-Z EQIV $4 +X,0.5-Y,0.5+Z EQIV $5 1-X,0.5+Y,1.5-Z EQIV $6 -X,0.5+Y,1.5-Z L.S. 20 PLAN 30 SIZE 0.16 0.06 0.03 HTAB O3 O4_$1 HTAB O5 O7_$1 HTAB O4 O3_$2 HTAB O2 O8_$3 HTAB N1 O1_$4 HTAB N1 O6_$5 HTAB N1 O7_$6 BOND CONF BOND $H MORE -1 FMAP 2 ACTA OMIT 2 1 2 OMIT 0 5 16 REM TRANSFORMED TO SPACE GROUP : P21/C:B1 REM REM REM REM REM REM WGHT 0.100000 FVAR 0.15460 O3 4 0.236669 0.122403 0.435209 11.00000 0.02259 0.03513 = 0.03528 -0.00557 -0.00560 0.00765 AFIX 83 H3 2 0.400761 0.132569 0.456544 11.00000 -1.50000 AFIX 0 O5 4 0.397925 0.354944 0.566981 11.00000 0.04135 0.04439 = 0.03133 0.00020 -0.01094 -0.01214 AFIX 83 H5 2 0.518963 0.353148 0.602245 11.00000 -1.50000 AFIX 0 O4 4 -0.218717 0.145111 0.507041 11.00000 0.02788 0.04224 = 0.03873 0.00956 -0.00482 -0.00072 AFIX 83 H4 2 -0.135121 0.075658 0.527033 11.00000 -1.50000 AFIX 0 O1 4 -0.221580 0.161417 0.337359 11.00000 0.03527 0.05069 = 0.03344 -0.01501 -0.01014 0.00707 O2 4 -0.329417 0.363728 0.383740 11.00000 0.04526 0.03174 = 0.03626 -0.00190 -0.01396 0.01770 AFIX 83 H2 2 -0.462774 0.366081 0.350876 11.00000 -1.50000 AFIX 0 O6 4 0.254032 0.148572 0.605378 11.00000 0.04111 0.05127 = 0.03210 0.01002 -0.00861 -0.00051 O8 4 -0.225767 0.584439 0.707322 11.00000 0.03300 0.03827 = 0.03724 0.00075 -0.01182 0.00616 C4 1 0.227339 0.248120 0.565373 11.00000 0.02549 0.04479 = 0.02489 -0.00589 0.00132 -0.00033 O7 4 -0.182159 0.361737 0.668136 11.00000 0.04414 0.02690 = 0.04286 -0.00959 -0.01236 -0.00320 C2 1 0.081188 0.249359 0.439841 11.00000 0.02463 0.01145 = 0.03101 -0.00208 -0.00263 -0.01106 AFIX 13 H2A 2 0.201721 0.333055 0.437271 11.00000 -1.20000 AFIX 0 C5 1 -0.101244 0.468291 0.706488 11.00000 0.02561 0.03427 = 0.02795 0.00607 0.00125 0.00432 C1 1 -0.174764 0.252116 0.380129 11.00000 0.02766 0.02312 = 0.02268 -0.00070 0.00020 0.00186 C3 1 -0.022853 0.256584 0.505152 11.00000 0.02579 0.01564 = 0.03075 -0.00209 -0.00281 0.00530 AFIX 13 H3A 2 -0.119104 0.348972 0.506638 11.00000 -1.20000 AFIX 0 N1 3 0.204968 0.547481 0.812835 11.00000 0.03236 0.04132 = 0.03257 0.00603 -0.01089 -0.00775 AFIX 33 H1A 2 0.372181 0.535129 0.841228 11.00000 -1.50000 H1B 2 0.190317 0.637961 0.798165 11.00000 -1.50000 H1C 2 0.066118 0.528942 0.833791 11.00000 -1.50000 AFIX 0 C6 1 0.182305 0.448990 0.755514 11.00000 0.02867 0.02207 = 0.02683 0.00011 -0.00529 -0.00587 AFIX 23 H6A 2 0.200758 0.350367 0.771469 11.00000 -1.20000 H6B 2 0.334985 0.468187 0.732967 11.00000 -1.20000 AFIX 0 HKLF 4 REM GLYDL REM R1 = 0.0619 for 585 Fo > 4sig(Fo) and 0.1320 for all 1108 data REM 136 parameters refined using 0 restraints END WGHT 0.0719 0.0000 REM Highest difference peak 0.218, deepest hole -0.283, 1-sigma level 0.060 Q1 1 0.0379 0.1288 0.4914 11.00000 0.05 0.22 Q2 1 -0.4262 0.1760 0.5614 11.00000 0.05 0.22 Q3 1 -0.4654 0.3633 0.4773 11.00000 0.05 0.21 Q4 1 0.1252 0.2237 0.5173 11.00000 0.05 0.20 Q5 1 0.1137 0.3449 0.6461 11.00000 0.05 0.20 Q6 1 0.4307 0.3714 0.4196 11.00000 0.05 0.19 Q7 1 0.2925 0.2764 0.6419 11.00000 0.05 0.18 Q8 1 0.5351 0.1857 0.4018 11.00000 0.05 0.18 Q9 1 0.5183 0.3339 0.6574 11.00000 0.05 0.18 Q10 1 -0.3512 0.2300 0.4175 11.00000 0.05 0.18 Q11 1 -0.4255 0.6182 0.7626 11.00000 0.05 0.17 Q12 1 -0.3712 0.2928 0.4318 11.00000 0.05 0.17 Q13 1 0.2512 0.6127 0.7373 11.00000 0.05 0.17 Q14 1 0.0499 0.1449 0.3238 11.00000 0.05 0.17 Q15 1 -0.1973 0.2645 0.5505 11.00000 0.05 0.16 Q16 1 0.1697 0.4305 0.6200 11.00000 0.05 0.16 Q17 1 0.4013 0.1143 0.3809 11.00000 0.05 0.16 Q18 1 0.2003 0.4031 0.8511 11.00000 0.05 0.16 Q19 1 0.0454 0.4714 0.7319 11.00000 0.05 0.16 Q20 1 -0.3613 0.3302 0.5307 11.00000 0.05 0.16 Q21 1 -0.0168 0.3150 0.3279 11.00000 0.05 0.15 Q22 1 -0.0296 0.6863 0.8314 11.00000 0.05 0.15 Q23 1 -0.2793 0.0455 0.2864 11.00000 0.05 0.15 Q24 1 -0.0109 0.2893 0.4007 11.00000 0.05 0.15 Q25 1 -0.5415 0.3037 0.2950 11.00000 0.05 0.15 Q26 1 0.1860 0.1368 0.5359 11.00000 0.05 0.15 Q27 1 0.2588 0.3616 0.8390 11.00000 0.05 0.15 Q28 1 0.4451 0.2542 0.6028 11.00000 0.05 0.14 Q29 1 -0.3274 0.1039 0.2604 11.00000 0.05 0.14 Q30 1 0.4956 0.5043 0.8180 11.00000 0.05 0.14 ; _shelx_res_checksum 7398 loop_ _space_group_symop_operation_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp O3 O 0.2367(5) 0.1224(5) 0.43521(12) 0.0329(14) Uani 1 1 d . . H3 H 0.4008 0.1326 0.4565 0.049 Uiso 1 1 calc R U O5 O 0.3979(6) 0.3549(5) 0.56698(13) 0.0420(15) Uani 1 1 d . . H5 H 0.5190 0.3531 0.6022 0.063 Uiso 1 1 calc R U O4 O -0.2187(5) 0.1451(5) 0.50704(13) 0.0382(15) Uani 1 1 d . . H4 H -0.1351 0.0757 0.5270 0.057 Uiso 1 1 calc R U O1 O -0.2216(6) 0.1614(5) 0.33736(15) 0.0426(18) Uani 1 1 d . . O2 O -0.3294(6) 0.3637(5) 0.38374(13) 0.0414(16) Uani 1 1 d . . H2 H -0.4628 0.3661 0.3509 0.062 Uiso 1 1 calc R U O6 O 0.2540(6) 0.1486(5) 0.60538(15) 0.0441(19) Uani 1 1 d . . O8 O -0.2258(6) 0.5844(5) 0.70732(13) 0.0393(15) Uani 1 1 d . . C4 C 0.2273(8) 0.2481(8) 0.5654(2) 0.032(2) Uani 1 1 d . . O7 O -0.1822(6) 0.3617(5) 0.66814(15) 0.0415(17) Uani 1 1 d . . C2 C 0.0812(8) 0.2494(7) 0.43984(17) 0.0238(18) Uani 1 1 d . . H2A H 0.2017 0.3331 0.4373 0.029 Uiso 1 1 calc R U C5 C -0.1012(8) 0.4683(9) 0.70649(19) 0.030(2) Uani 1 1 d . . C1 C -0.1748(8) 0.2521(8) 0.38013(18) 0.025(2) Uani 1 1 d . . C3 C -0.0229(8) 0.2566(7) 0.50515(18) 0.0255(18) Uani 1 1 d . . H3A H -0.1191 0.3490 0.5066 0.031 Uiso 1 1 calc R U N1 N 0.2050(6) 0.5475(6) 0.81283(15) 0.038(2) Uani 1 1 d . . H1A H 0.3722 0.5351 0.8412 0.057 Uiso 1 1 calc R U H1B H 0.1903 0.6380 0.7982 0.057 Uiso 1 1 calc R U H1C H 0.0661 0.5289 0.8338 0.057 Uiso 1 1 calc R U C6 C 0.1823(7) 0.4490(7) 0.75551(18) 0.028(2) Uani 1 1 d . . H6A H 0.2008 0.3504 0.7715 0.033 Uiso 1 1 calc R U H6B H 0.3350 0.4682 0.7330 0.033 Uiso 1 1 calc R U loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 O3 0.0226(12) 0.035(5) 0.0353(19) -0.0056(15) -0.0056(11) 0.0077(19) O5 0.0413(17) 0.044(5) 0.0313(19) 0.0002(15) -0.0109(12) -0.012(2) O4 0.0279(14) 0.042(5) 0.039(2) 0.0096(15) -0.0048(12) -0.0007(19) O1 0.0353(15) 0.051(6) 0.033(2) -0.0150(19) -0.0101(12) 0.007(2) O2 0.0453(17) 0.032(6) 0.036(2) -0.0019(15) -0.0140(13) 0.018(2) O6 0.0411(17) 0.051(7) 0.032(2) 0.0100(19) -0.0086(13) -0.001(2) O8 0.0330(16) 0.038(6) 0.037(2) 0.0007(17) -0.0118(12) 0.006(2) C4 0.025(2) 0.045(9) 0.025(3) -0.006(3) 0.0013(17) 0.000(3) O7 0.0441(17) 0.027(6) 0.043(2) -0.0096(18) -0.0124(14) -0.003(2) C2 0.0246(18) 0.011(7) 0.031(3) -0.002(2) -0.0026(15) -0.011(3) C5 0.026(2) 0.034(9) 0.028(3) 0.006(2) 0.0013(16) 0.004(3) C1 0.028(2) 0.023(8) 0.023(3) -0.001(2) 0.0002(16) 0.002(3) C3 0.0258(19) 0.016(6) 0.031(2) -0.002(2) -0.0028(15) 0.005(3) N1 0.0324(17) 0.041(7) 0.033(2) 0.0060(19) -0.0109(14) -0.008(2) C6 0.0287(19) 0.022(8) 0.027(2) 0.000(2) -0.0053(15) -0.006(3) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle C2 O3 H3 109.5 C4 O5 H5 109.5 C3 O4 H4 109.5 C1 O2 H2 109.5 O6 C4 O5 126.6(4) O6 C4 C3 121.7(6) O5 C4 C3 111.7(5) O3 C2 C3 112.3(4) O3 C2 C1 107.9(4) C3 C2 C1 109.3(3) O3 C2 H2A 109.1 C3 C2 H2A 109.1 C1 C2 H2A 109.1 O8 C5 O7 127.3(4) O8 C5 C6 117.7(5) O7 C5 C6 115.1(6) O1 C1 O2 126.2(4) O1 C1 C2 123.8(5) O2 C1 C2 110.0(4) O4 C3 C4 110.9(4) O4 C3 C2 110.2(4) C4 C3 C2 110.3(3) O4 C3 H3A 108.5 C4 C3 H3A 108.5 C2 C3 H3A 108.5 C6 N1 H1A 109.5 C6 N1 H1B 109.5 H1A N1 H1B 109.5 C6 N1 H1C 109.5 H1A N1 H1C 109.5 H1B N1 H1C 109.5 N1 C6 C5 110.3(4) N1 C6 H6A 109.6 C5 C6 H6A 109.6 N1 C6 H6B 109.6 C5 C6 H6B 109.6 H6A C6 H6B 108.1 loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance O3 C2 1.413(6) O3 H3 0.8200 O5 C4 1.286(7) O5 H5 0.8200 O4 C3 1.409(6) O4 H4 0.8200 O1 C1 1.199(6) O2 C1 1.290(7) O2 H2 0.8200 O6 C4 1.222(8) O8 C5 1.238(7) C4 C3 1.521(5) O7 C5 1.269(8) C2 C3 1.530(6) C2 C1 1.530(5) C2 H2A 0.9800 C5 C6 1.515(5) C3 H3A 0.9800 N1 C6 1.471(7) N1 H1A 0.8900 N1 H1B 0.8900 N1 H1C 0.8900 C6 H6A 0.9700 C6 H6B 0.9700 loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A O3 H3 O4 0.82 1.90 2.718(4) 176.8 1_655 O5 H5 O7 0.82 1.74 2.552(4) 169.3 1_655 O4 H4 O3 0.82 2.10 2.761(6) 138.1 3_556 O2 H2 O8 0.82 1.76 2.553(4) 163.2 3_466 N1 H1C O1 0.89 2.26 2.955(6) 134.6 4_566 N1 H1A O6 0.89 2.16 2.923(4) 143.0 2_656 N1 H1B O7 0.89 2.19 2.951(8) 142.7 2_556 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion O3 C2 C1 O1 -1.7(7) C3 C2 C1 O1 -124.0(6) O3 C2 C1 O2 177.5(4) C3 C2 C1 O2 55.2(6) O6 C4 C3 O4 5.4(7) O5 C4 C3 O4 -175.4(4) O6 C4 C3 C2 -117.0(6) O5 C4 C3 C2 62.2(6) O3 C2 C3 O4 -64.6(4) C1 C2 C3 O4 55.0(6) O3 C2 C3 C4 58.1(6) C1 C2 C3 C4 177.8(6) O8 C5 C6 N1 22.9(7) O7 C5 C6 N1 -158.0(5)