#------------------------------------------------------------------------------
#$Date: 2025-08-22 18:52:37 +0300 (Fri, 22 Aug 2025) $
#$Revision: 301865 $
#$URL: file:///home/coder/svn-repositories/cod/cif/7/22/91/7229127.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_7229127
loop_
_publ_author_name
'Hatcher, Lauren E.'
'Raithby, Paul R.'
_publ_section_title
;
 The Impact of Hydrogen Bonding on 100% Photo-Switching in Solid-State
 Nitro-Nitrito Linkage Isomers
;
_journal_name_full               CrystEngComm
_journal_paper_doi               10.1039/C7CE01366C
_journal_year                    2017
_chemical_formula_moiety         'C12 H29 N4 O2 Pd, C F3 O3 S'
_chemical_formula_sum            'C13 H29 F3 N4 O5 Pd S'
_chemical_formula_weight         516.86
_chemical_name_systematic
'Nitro(N,N,N,N'-tetraethyldiethylenetriamine)palladium(II) trifluoromethanesulfonate'
_space_group_crystal_system      monoclinic
_space_group_IT_number           14
_space_group_name_Hall           '-P 2yn'
_space_group_name_H-M_alt        'P 1 21/n 1'
_symmetry_space_group_name_Hall  '-P 2yn'
_symmetry_space_group_name_H-M   'P 1 21/n 1'
_atom_sites_solution_hydrogens   geom
_audit_creation_method           SHELXL-2014
_audit_update_record
;
2017-07-25 deposited with the CCDC.
2017-09-06 downloaded from the CCDC.
;
_cell_angle_alpha                90
_cell_angle_beta                 98.782(4)
_cell_angle_gamma                90
_cell_formula_units_Z            4
_cell_length_a                   9.2689(4)
_cell_length_b                   13.0528(5)
_cell_length_c                   16.7054(7)
_cell_measurement_reflns_used    3597
_cell_measurement_temperature    120(2)
_cell_measurement_theta_max      28.8140
_cell_measurement_theta_min      3.9930
_cell_volume                     1997.41(14)
_computing_cell_refinement       'CrysAlisPro 1.171.38.43 (Rigaku OD, 2015)'
_computing_data_collection       'CrysAlisPro 1.171.38.43 (Rigaku OD, 2015)'
_computing_data_reduction        'CrysAlisPro 1.171.38.43 (Rigaku OD, 2015)'
_computing_molecular_graphics    'Olex2 (Dolomanov et al., 2009)'
_computing_publication_material  'Olex2 (Dolomanov et al., 2009)'
_computing_structure_refinement  'ShelXL (Sheldrick, 2015)'
_computing_structure_solution    'ShelXT (Sheldrick, 2015)'
_diffrn_ambient_temperature      120(2)
_diffrn_detector_area_resol_mean 10.3795
_diffrn_measured_fraction_theta_full 0.996
_diffrn_measured_fraction_theta_max 0.995
_diffrn_measurement_device_type  'Xcalibur, Atlas, Gemini ultra'
_diffrn_measurement_method       'ω scans'
_diffrn_radiation_type           MoK\a
_diffrn_radiation_wavelength     0.71073
_diffrn_reflns_av_R_equivalents  0.0291
_diffrn_reflns_av_unetI/netI     0.0444
_diffrn_reflns_Laue_measured_fraction_full 0.996
_diffrn_reflns_Laue_measured_fraction_max 0.995
_diffrn_reflns_limit_h_max       8
_diffrn_reflns_limit_h_min       -11
_diffrn_reflns_limit_k_max       16
_diffrn_reflns_limit_k_min       -13
_diffrn_reflns_limit_l_max       20
_diffrn_reflns_limit_l_min       -20
_diffrn_reflns_number            8852
_diffrn_reflns_point_group_measured_fraction_full 0.996
_diffrn_reflns_point_group_measured_fraction_max 0.995
_diffrn_reflns_theta_full        25.000
_diffrn_reflns_theta_max         26.372
_diffrn_reflns_theta_min         3.357
_diffrn_source                   'fine-focus sealed X-ray tube'
_diffrn_source_type              'Enhance (Mo) X-ray Source'
_exptl_absorpt_coefficient_mu    1.092
_exptl_absorpt_correction_T_max  1.00000
_exptl_absorpt_correction_T_min  0.81297
_exptl_absorpt_correction_type   multi-scan
_exptl_absorpt_process_details
;
CrysAlisPro 1.171.38.43 (Rigaku Oxford Diffraction, 2015)
Empirical absorption correction using spherical harmonics,
 implemented in SCALE3 ABSPACK scaling algorithm.
;
_exptl_crystal_colour            colourless
_exptl_crystal_density_diffrn    1.719
_exptl_crystal_description       block
_exptl_crystal_F_000             1056
_exptl_crystal_size_max          0.450
_exptl_crystal_size_mid          0.240
_exptl_crystal_size_min          0.200
_refine_diff_density_max         0.618
_refine_diff_density_min         -0.809
_refine_diff_density_rms         0.091
_refine_ls_extinction_method     none
_refine_ls_goodness_of_fit_ref   1.041
_refine_ls_hydrogen_treatment    constr
_refine_ls_matrix_type           full
_refine_ls_number_parameters     270
_refine_ls_number_reflns         4069
_refine_ls_number_restraints     243
_refine_ls_restrained_S_all      1.032
_refine_ls_R_factor_all          0.0454
_refine_ls_R_factor_gt           0.0324
_refine_ls_shift/su_max          0.001
_refine_ls_shift/su_mean         0.000
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details
'w=1/[σ²(Fo²)+(0.0279P)²+1.1341P] where P=(Fo²+2Fc²)/3'
_refine_ls_weighting_scheme      calc
_refine_ls_wR_factor_gt          0.0661
_refine_ls_wR_factor_ref         0.0716
_reflns_Friedel_coverage         0.000
_reflns_number_gt                3351
_reflns_number_total             4069
_reflns_threshold_expression     'I > 2σ(I)'
_cod_data_source_file            c7ce01366c2.cif
_cod_data_source_block           VT_120K
_cod_database_code               7229127
_shelx_space_group_comment
;
The symmetry employed for this shelxl refinement is uniquely defined
by the following loop, which should always be used as a source of
symmetry information in preference to the above space-group names.
They are only intended as comments.
;
_shelx_estimated_absorpt_t_min   0.639
_shelx_estimated_absorpt_t_max   0.811
_shelxl_version_number           2014-1
loop_
_space_group_symop_operation_xyz
'x, y, z'
'-x+1/2, y+1/2, -z+1/2'
'-x, -y, -z'
'x-1/2, -y-1/2, z-1/2'
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_U_iso_or_equiv
_atom_site_adp_type
_atom_site_occupancy
_atom_site_site_symmetry_order
_atom_site_calc_flag
_atom_site_refinement_flags_posn
_atom_site_refinement_flags_adp
_atom_site_refinement_flags_occupancy
_atom_site_disorder_assembly
_atom_site_disorder_group
C1 C 0.2576(4) 0.4373(2) 0.40867(19) 0.0249(7) Uani 1 1 d . U . . .
H1A H 0.2554 0.4427 0.4676 0.030 Uiso 1 1 calc R U . . .
H1B H 0.1931 0.3800 0.3872 0.030 Uiso 1 1 calc R U . . .
C2 C 0.4108(4) 0.4160(3) 0.39430(18) 0.0255(7) Uani 1 1 d . U . . .
H2A H 0.4781 0.4699 0.4194 0.031 Uiso 1 1 calc R U . . .
H2B H 0.4446 0.3489 0.4178 0.031 Uiso 1 1 calc R U . . .
C3 C 0.5488(3) 0.4174(3) 0.27537(18) 0.0250(7) Uani 1 1 d . U . . .
H3A H 0.5999 0.3510 0.2858 0.030 Uiso 1 1 calc R U . . .
H3B H 0.6115 0.4723 0.3027 0.030 Uiso 1 1 calc R U . . .
C4 C 0.5143(4) 0.4377(2) 0.18496(18) 0.0246(7) Uani 1 1 d . U . . .
H4A H 0.6063 0.4460 0.1623 0.030 Uiso 1 1 calc R U . . .
H4B H 0.4605 0.3787 0.1577 0.030 Uiso 1 1 calc R U . . .
C5 C 0.0404(3) 0.5412(3) 0.35678(19) 0.0252(7) Uani 1 1 d . U . . .
H5A H 0.0094 0.6104 0.3369 0.030 Uiso 1 1 calc R U . . .
H5B H 0.0085 0.5319 0.4102 0.030 Uiso 1 1 calc R U . . .
C6 C -0.0357(4) 0.4625(3) 0.2987(2) 0.0423(9) Uani 1 1 d . U . . .
H6A H 0.0077 0.4626 0.2487 0.064 Uiso 1 1 calc R U . . .
H6B H -0.1397 0.4794 0.2859 0.064 Uiso 1 1 calc R U . . .
H6C H -0.0245 0.3945 0.3237 0.064 Uiso 1 1 calc R U . . .
C7 C 0.2674(4) 0.6264(2) 0.41534(18) 0.0239(6) Uani 1 1 d . U . . .
H7A H 0.2408 0.6889 0.3828 0.029 Uiso 1 1 calc R U . . .
H7B H 0.3750 0.6201 0.4228 0.029 Uiso 1 1 calc R U . . .
C8 C 0.2216(4) 0.6414(3) 0.49824(19) 0.0303(8) Uani 1 1 d . U . . .
H8A H 0.1170 0.6570 0.4917 0.046 Uiso 1 1 calc R U . . .
H8B H 0.2769 0.6984 0.5262 0.046 Uiso 1 1 calc R U . . .
H8C H 0.2414 0.5787 0.5302 0.046 Uiso 1 1 calc R U . . .
C9 C 0.3420(4) 0.5327(2) 0.08467(18) 0.0250(7) Uani 1 1 d . U . . .
H9A H 0.4123 0.5211 0.0465 0.030 Uiso 1 1 calc R U . . .
H9B H 0.2973 0.6009 0.0726 0.030 Uiso 1 1 calc R U . . .
C10 C 0.2240(4) 0.4522(3) 0.0703(2) 0.0309(8) Uani 1 1 d . U . . .
H10A H 0.1693 0.4602 0.0156 0.046 Uiso 1 1 calc R U . . .
H10B H 0.1575 0.4602 0.1102 0.046 Uiso 1 1 calc R U . . .
H10C H 0.2685 0.3839 0.0757 0.046 Uiso 1 1 calc R U . . .
C11 C 0.5179(4) 0.6275(2) 0.18295(18) 0.0245(7) Uani 1 1 d . U . . .
H11A H 0.5731 0.6243 0.2385 0.029 Uiso 1 1 calc R U . . .
H11B H 0.4533 0.6881 0.1802 0.029 Uiso 1 1 calc R U . . .
C12 C 0.6260(4) 0.6438(3) 0.1246(2) 0.0332(8) Uani 1 1 d . U . . .
H12A H 0.5728 0.6556 0.0700 0.050 Uiso 1 1 calc R U . . .
H12B H 0.6878 0.5830 0.1243 0.050 Uiso 1 1 calc R U . . .
H12C H 0.6871 0.7035 0.1417 0.050 Uiso 1 1 calc R U . . .
N2 N 0.2030(3) 0.53566(19) 0.36750(14) 0.0189(5) Uani 1 1 d . U . . .
N3 N 0.4059(3) 0.4151(2) 0.30503(14) 0.0212(5) Uani 1 1 d . U . . .
H3 H 0.3519 0.3525 0.2829 0.025 Uiso 1 1 calc R U . . .
N4 N 0.4234(3) 0.53320(18) 0.16934(14) 0.0191(5) Uani 1 1 d . U . . .
Pd1 Pd 0.29232(2) 0.53847(2) 0.26025(2) 0.01736(8) Uani 1 1 d . U . . .
N1_a N 0.1880(16) 0.6633(9) 0.2185(9) 0.023(2) Uani 0.433(7) 1 d D U P A 1
O1_a O 0.2339(7) 0.7448(5) 0.2468(4) 0.0425(18) Uani 0.433(7) 1 d D U P A 1
O2_a O 0.0779(13) 0.6599(7) 0.1675(8) 0.0425(18) Uani 0.433(7) 1 d D U P A 1
N1A_b N 0.0651(9) 0.6801(5) 0.1719(6) 0.0263(16) Uani 0.567(7) 1 d D U P A 2
O1A_b O 0.1889(9) 0.6761(6) 0.2206(6) 0.0194(15) Uani 0.567(7) 1 d D U P A 2
O2A_b O 0.0159(5) 0.5929(3) 0.1526(3) 0.0360(14) Uani 0.567(7) 1 d D U P A 2
C13 C 0.6079(3) 0.8043(2) 0.40441(19) 0.0226(5) Uani 1 1 d . U . . .
F1 F 0.6552(2) 0.90107(13) 0.40109(11) 0.0298(4) Uani 1 1 d . U . . .
F2 F 0.5587(2) 0.79372(15) 0.47517(11) 0.0331(5) Uani 1 1 d . U . . .
F3 F 0.4945(2) 0.79329(14) 0.34544(11) 0.0304(4) Uani 1 1 d . U . . .
O3 O 0.7912(3) 0.73771(17) 0.31662(13) 0.0299(5) Uani 1 1 d . U . . .
O4 O 0.6777(2) 0.61549(17) 0.39703(13) 0.0272(5) Uani 1 1 d . U . . .
O5 O 0.8594(2) 0.73441(18) 0.46340(14) 0.0327(6) Uani 1 1 d . U . . .
S1 S 0.75162(8) 0.71295(6) 0.39427(5) 0.02185(17) Uani 1 1 d . U . . .
loop_
_atom_type_symbol
_atom_type_description
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
Pd Pd -0.9988 1.0072 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
S S 0.1246 0.1234 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle
C2 C1 N2 110.2(2)
C2 C1 H1A 109.6
N2 C1 H1A 109.6
C2 C1 H1B 109.6
N2 C1 H1B 109.6
H1A C1 H1B 108.1
N3 C2 C1 106.1(3)
N3 C2 H2A 110.5
C1 C2 H2A 110.5
N3 C2 H2B 110.5
C1 C2 H2B 110.5
H2A C2 H2B 108.7
N3 C3 C4 105.8(2)
N3 C3 H3A 110.6
C4 C3 H3A 110.6
N3 C3 H3B 110.6
C4 C3 H3B 110.6
H3A C3 H3B 108.7
N4 C4 C3 110.2(2)
N4 C4 H4A 109.6
C3 C4 H4A 109.6
N4 C4 H4B 109.6
C3 C4 H4B 109.6
H4A C4 H4B 108.1
N2 C5 C6 114.1(3)
N2 C5 H5A 108.7
C6 C5 H5A 108.7
N2 C5 H5B 108.7
C6 C5 H5B 108.7
H5A C5 H5B 107.6
C5 C6 H6A 109.5
C5 C6 H6B 109.5
H6A C6 H6B 109.5
C5 C6 H6C 109.5
H6A C6 H6C 109.5
H6B C6 H6C 109.5
N2 C7 C8 116.3(3)
N2 C7 H7A 108.2
C8 C7 H7A 108.2
N2 C7 H7B 108.2
C8 C7 H7B 108.2
H7A C7 H7B 107.4
C7 C8 H8A 109.5
C7 C8 H8B 109.5
H8A C8 H8B 109.5
C7 C8 H8C 109.5
H8A C8 H8C 109.5
H8B C8 H8C 109.5
N4 C9 C10 113.7(3)
N4 C9 H9A 108.8
C10 C9 H9A 108.8
N4 C9 H9B 108.8
C10 C9 H9B 108.8
H9A C9 H9B 107.7
C9 C10 H10A 109.5
C9 C10 H10B 109.5
H10A C10 H10B 109.5
C9 C10 H10C 109.5
H10A C10 H10C 109.5
H10B C10 H10C 109.5
N4 C11 C12 116.4(3)
N4 C11 H11A 108.2
C12 C11 H11A 108.2
N4 C11 H11B 108.2
C12 C11 H11B 108.2
H11A C11 H11B 107.4
C11 C12 H12A 109.5
C11 C12 H12B 109.5
H12A C12 H12B 109.5
C11 C12 H12C 109.5
H12A C12 H12C 109.5
H12B C12 H12C 109.5
C5 N2 C7 109.7(2)
C5 N2 C1 111.0(2)
C7 N2 C1 110.6(2)
C5 N2 Pd1 114.96(19)
C7 N2 Pd1 105.43(17)
C1 N2 Pd1 104.91(17)
C3 N3 C2 116.3(2)
C3 N3 Pd1 107.73(18)
C2 N3 Pd1 107.63(19)
C3 N3 H3 108.3
C2 N3 H3 108.3
Pd1 N3 H3 108.3
C9 N4 C4 110.4(2)
C9 N4 C11 110.1(2)
C4 N4 C11 110.7(2)
C9 N4 Pd1 114.98(19)
C4 N4 Pd1 105.90(17)
C11 N4 Pd1 104.66(17)
N1_a Pd1 N3 177.5(3)
N1_a Pd1 N2 94.6(5)
N3 Pd1 N2 85.41(10)
N1_a Pd1 N4 94.5(5)
N3 Pd1 N4 85.07(10)
N2 Pd1 N4 167.58(10)
N3 Pd1 O1A_b 174.4(2)
N2 Pd1 O1A_b 93.7(3)
N4 Pd1 O1A_b 95.0(3)
O1_a N1_a O2_a 120.5(13)
O1_a N1_a Pd1 117.6(10)
O2_a N1_a Pd1 121.9(8)
O2A_b N1A_b O1A_b 112.1(6)
N1A_b O1A_b Pd1 123.3(5)
F3 C13 F2 107.8(2)
F3 C13 F1 107.3(2)
F2 C13 F1 106.9(2)
F3 C13 S1 111.5(2)
F2 C13 S1 111.6(2)
F1 C13 S1 111.4(2)
O5 S1 O3 116.10(15)
O5 S1 O4 114.87(14)
O3 S1 O4 114.39(13)
O5 S1 C13 103.17(14)
O3 S1 C13 103.21(14)
O4 S1 C13 102.50(14)
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_distance
C1 C2 1.502(4)
C1 N2 1.507(4)
C1 H1A 0.9900
C1 H1B 0.9900
C2 N3 1.485(4)
C2 H2A 0.9900
C2 H2B 0.9900
C3 N3 1.484(4)
C3 C4 1.519(4)
C3 H3A 0.9900
C3 H3B 0.9900
C4 N4 1.504(4)
C4 H4A 0.9900
C4 H4B 0.9900
C5 N2 1.492(4)
C5 C6 1.512(5)
C5 H5A 0.9900
C5 H5B 0.9900
C6 H6A 0.9800
C6 H6B 0.9800
C6 H6C 0.9800
C7 N2 1.500(4)
C7 C8 1.522(4)
C7 H7A 0.9900
C7 H7B 0.9900
C8 H8A 0.9800
C8 H8B 0.9800
C8 H8C 0.9800
C9 N4 1.498(4)
C9 C10 1.509(4)
C9 H9A 0.9900
C9 H9B 0.9900
C10 H10A 0.9800
C10 H10B 0.9800
C10 H10C 0.9800
C11 N4 1.507(4)
C11 C12 1.516(4)
C11 H11A 0.9900
C11 H11B 0.9900
C12 H12A 0.9800
C12 H12B 0.9800
C12 H12C 0.9800
N2 Pd1 2.086(2)
N3 Pd1 2.005(2)
N3 H3 1.0000
N4 Pd1 2.086(2)
Pd1 N1_a 1.967(14)
Pd1 O1A_b 2.095(8)
N1_a O1_a 1.214(9)
N1_a O2_a 1.226(8)
N1A_b O2A_b 1.251(7)
N1A_b O1A_b 1.303(6)
C13 F3 1.334(3)
C13 F2 1.337(3)
C13 F1 1.341(4)
C13 S1 1.815(3)
O3 S1 1.438(2)
O4 S1 1.449(2)
O5 S1 1.435(2)
loop_
_geom_torsion_atom_site_label_1
_geom_torsion_atom_site_label_2
_geom_torsion_atom_site_label_3
_geom_torsion_atom_site_label_4
_geom_torsion
N2 C1 C2 N3 -56.0(3)
N3 C3 C4 N4 54.5(3)
C6 C5 N2 C7 171.1(3)
C6 C5 N2 C1 -66.4(3)
C6 C5 N2 Pd1 52.5(3)
C8 C7 N2 C5 56.7(3)
C8 C7 N2 C1 -66.1(3)
C8 C7 N2 Pd1 -179.0(2)
C2 C1 N2 C5 161.0(3)
C2 C1 N2 C7 -77.0(3)
C2 C1 N2 Pd1 36.2(3)
C4 C3 N3 C2 -168.8(3)
C4 C3 N3 Pd1 -48.0(3)
C1 C2 N3 C3 167.6(3)
C1 C2 N3 Pd1 46.7(3)
C10 C9 N4 C4 68.4(3)
C10 C9 N4 C11 -169.1(3)
C10 C9 N4 Pd1 -51.3(3)
C3 C4 N4 C9 -158.3(3)
C3 C4 N4 C11 79.6(3)
C3 C4 N4 Pd1 -33.2(3)
C12 C11 N4 C9 -55.8(4)
C12 C11 N4 C4 66.4(3)
C12 C11 N4 Pd1 -179.9(2)
O2A_b N1A_b O1A_b Pd1 0.5(10)
F3 C13 S1 O5 -178.2(2)
F2 C13 S1 O5 -57.5(2)
F1 C13 S1 O5 62.0(2)
F3 C13 S1 O3 60.5(2)
F2 C13 S1 O3 -178.8(2)
F1 C13 S1 O3 -59.3(2)
F3 C13 S1 O4 -58.6(2)
F2 C13 S1 O4 62.1(2)
F1 C13 S1 O4 -178.4(2)
loop_
_cod_related_entry_id
_cod_related_entry_database
_cod_related_entry_code
1 PubChem 139203944
