#------------------------------------------------------------------------------ #$Date: 2019-11-28 21:05:23 +0200 (Thu, 28 Nov 2019) $ #$Revision: 244617 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/23/92/7239248.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7239248 loop_ _publ_author_name 'Shankar, Krapa' 'Das, Babulal' 'Baruah, Jubaraj B.' _publ_section_title ; Organic cations controlling the nuclearity of copper(ii) 2,5-pyridinedicarboxylates ; _journal_issue 48 _journal_name_full 'RSC Advances' _journal_page_first 26220 _journal_paper_doi 10.1039/c3ra44008g _journal_volume 3 _journal_year 2013 _chemical_formula_sum 'C32 H24 Cu N6 O12' _chemical_formula_weight 748.11 _space_group_IT_number 2 _space_group_name_Hall '-P 1' _space_group_name_H-M_alt 'P -1' _symmetry_cell_setting triclinic _symmetry_space_group_name_H-M 'P -1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 65.544(9) _cell_angle_beta 79.053(6) _cell_angle_gamma 77.697(6) _cell_formula_units_Z 1 _cell_length_a 6.6726(4) _cell_length_b 10.7950(10) _cell_length_c 12.0764(10) _cell_measurement_temperature 296(2) _cell_volume 768.57(12) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 296(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0356 _diffrn_reflns_av_sigmaI/netI 0.0666 _diffrn_reflns_limit_h_max 7 _diffrn_reflns_limit_h_min -7 _diffrn_reflns_limit_k_max 12 _diffrn_reflns_limit_k_min -11 _diffrn_reflns_limit_l_max 14 _diffrn_reflns_limit_l_min -12 _diffrn_reflns_number 4952 _diffrn_reflns_theta_full 25.00 _diffrn_reflns_theta_max 25.00 _diffrn_reflns_theta_min 3.15 _exptl_absorpt_coefficient_mu 0.790 _exptl_absorpt_correction_type none _exptl_crystal_colour red _exptl_crystal_density_diffrn 1.616 _exptl_crystal_density_method 'not measured' _exptl_crystal_description blocks _exptl_crystal_F_000 383 _exptl_crystal_size_max 0.35 _exptl_crystal_size_mid 0.24 _exptl_crystal_size_min 0.20 _refine_diff_density_max 0.703 _refine_diff_density_min -0.835 _refine_diff_density_rms 0.105 _refine_ls_extinction_method none _refine_ls_goodness_of_fit_ref 0.922 _refine_ls_hydrogen_treatment mixed _refine_ls_matrix_type full _refine_ls_number_parameters 244 _refine_ls_number_reflns 2699 _refine_ls_number_restraints 1 _refine_ls_restrained_S_all 0.922 _refine_ls_R_factor_all 0.0780 _refine_ls_R_factor_gt 0.0628 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.1356P)^2^+1.1637P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.1779 _refine_ls_wR_factor_ref 0.1964 _reflns_number_gt 2175 _reflns_number_total 2699 _reflns_threshold_expression >2sigma(I) _cod_data_source_file c3ra44008g.txt _cod_data_source_block 25pdccuaq _cod_depositor_comments ; The following automatic conversions were performed: data item '_symmetry_cell_setting' value 'Triclinic' was changed to 'triclinic' in accordance with the /home/saulius/struct/COD-crude-data/automatic-downloads/DataCite-retrospective/RSC/depositions/lib/dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.2 last updated on 2011-04-26. Automatic conversion script Id: cif_fix_values 6909 2019-04-08 15:41:33Z antanas ; _cod_original_cell_volume 768.56(11) _cod_original_sg_symbol_H-M P-1 _cod_database_code 7239248 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags C1 C 0.5486(7) 0.4955(4) 0.2703(4) 0.0255(9) Uani 1 1 d . C2 C 0.7522(7) 0.4264(5) 0.3195(4) 0.0269(10) Uani 1 1 d . C3 C 0.9201(7) 0.3782(6) 0.2550(4) 0.0344(11) Uani 1 1 d . H3 H 0.9110 0.3841 0.1770 0.041 Uiso 1 1 calc R C4 C 1.1033(7) 0.3206(5) 0.3074(4) 0.0326(11) Uani 1 1 d . H4 H 1.2177 0.2868 0.2650 0.039 Uiso 1 1 calc R C5 C 1.1149(6) 0.3136(4) 0.4232(4) 0.0249(9) Uani 1 1 d . C6 C 0.9392(7) 0.3646(5) 0.4831(4) 0.0257(9) Uani 1 1 d . H6 H 0.9448 0.3605 0.5609 0.031 Uiso 1 1 calc R C7 C 1.3115(7) 0.2518(5) 0.4842(4) 0.0267(10) Uani 1 1 d . C8 C 0.6310(8) 0.0822(7) 0.2170(5) 0.0439(14) Uani 1 1 d . H8 H 0.5961 0.0898 0.2925 0.053 Uiso 1 1 calc R C9 C 0.6303(7) 0.2002(6) 0.1112(5) 0.0412(13) Uani 1 1 d . H9 H 0.5986 0.2867 0.1150 0.049 Uiso 1 1 calc R C10 C 0.6774(7) 0.1874(5) -0.0002(5) 0.0359(11) Uani 1 1 d . H10 H 0.6748 0.2659 -0.0723 0.043 Uiso 1 1 calc R C11 C 0.7296(6) 0.0565(5) -0.0058(4) 0.0267(10) Uani 1 1 d . C12 C 0.7793(7) 0.0350(5) -0.1182(4) 0.0311(10) Uani 1 1 d . C13 C 0.8311(7) -0.0988(5) -0.1111(4) 0.0330(11) Uani 1 1 d . H13 H 0.8640 -0.1142 -0.1832 0.040 Uiso 1 1 calc R C14 C 0.8356(7) -0.2112(6) 0.0005(5) 0.0367(11) Uani 1 1 d . H14 H 0.8734 -0.2994 0.0009 0.044 Uiso 1 1 calc R C15 C 0.7861(7) -0.1958(5) 0.1093(4) 0.0341(11) Uani 1 1 d . H15 H 0.7877 -0.2715 0.1835 0.041 Uiso 1 1 calc R C16 C 0.7325(6) -0.0606(5) 0.1048(4) 0.0288(10) Uani 1 1 d . Cu1 Cu 0.5000 0.5000 0.5000 0.0307(3) Uani 1 2 d S H3A H 0.808(10) 0.132(7) -0.306(6) 0.07(2) Uiso 1 1 d . H3B H 0.699(11) 0.229(8) -0.232(6) 0.08(2) Uiso 1 1 d . H2N H 0.681(11) -0.126(4) 0.281(4) 0.07(2) Uiso 1 1 d D N1 N 0.7619(5) 0.4195(4) 0.4325(3) 0.0248(8) Uani 1 1 d . N2 N 0.6800(6) -0.0407(5) 0.2132(4) 0.0340(9) Uani 1 1 d D N3 N 0.7773(7) 0.1442(5) -0.2298(4) 0.0420(11) Uani 1 1 d . O1 O 0.4175(5) 0.5466(3) 0.3389(3) 0.0310(7) Uani 1 1 d . O2 O 0.5214(5) 0.5026(4) 0.1705(3) 0.0385(9) Uani 1 1 d . O3 O 1.3204(5) 0.2729(4) 0.5780(3) 0.0354(8) Uani 1 1 d . O4 O 1.4487(6) 0.1873(5) 0.4362(4) 0.0568(12) Uani 1 1 d . O5 O 0.7952(6) 0.0468(5) 0.5623(4) 0.0588(11) Uani 1 1 d . O6 O 0.7751(16) 0.5026(12) 0.9658(10) 0.180(4) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.032(2) 0.018(2) 0.026(2) -0.0074(18) -0.0052(18) -0.0043(17) C2 0.030(2) 0.027(2) 0.027(2) -0.0130(19) -0.0036(18) -0.0047(18) C3 0.032(2) 0.051(3) 0.025(2) -0.021(2) -0.0038(18) -0.002(2) C4 0.027(2) 0.041(3) 0.031(2) -0.020(2) 0.0027(18) 0.000(2) C5 0.028(2) 0.020(2) 0.025(2) -0.0082(18) -0.0004(17) -0.0063(17) C6 0.030(2) 0.027(2) 0.022(2) -0.0104(19) -0.0027(17) -0.0090(18) C7 0.030(2) 0.023(2) 0.023(2) -0.0050(18) -0.0041(17) -0.0042(18) C8 0.035(3) 0.066(4) 0.044(3) -0.036(3) -0.007(2) -0.002(3) C9 0.032(3) 0.047(3) 0.054(3) -0.032(3) -0.005(2) 0.001(2) C10 0.023(2) 0.034(3) 0.045(3) -0.011(2) -0.0042(19) -0.0029(19) C11 0.015(2) 0.035(3) 0.032(2) -0.014(2) -0.0025(16) -0.0039(17) C12 0.022(2) 0.037(3) 0.034(2) -0.012(2) -0.0045(18) -0.0053(19) C13 0.026(2) 0.044(3) 0.033(2) -0.021(2) -0.0009(18) -0.004(2) C14 0.027(2) 0.038(3) 0.050(3) -0.023(2) -0.003(2) -0.004(2) C15 0.037(3) 0.030(3) 0.032(3) -0.007(2) -0.005(2) -0.006(2) C16 0.019(2) 0.040(3) 0.029(2) -0.016(2) -0.0036(17) -0.0030(18) Cu1 0.0255(5) 0.0404(6) 0.0271(5) -0.0179(4) -0.0055(3) 0.0056(3) N1 0.0252(18) 0.025(2) 0.0251(18) -0.0112(16) -0.0031(14) -0.0030(15) N2 0.030(2) 0.044(3) 0.029(2) -0.015(2) -0.0048(16) -0.0045(18) N3 0.048(3) 0.043(3) 0.027(2) -0.007(2) -0.0043(18) -0.004(2) O1 0.0269(16) 0.0374(19) 0.0303(16) -0.0176(15) -0.0070(13) 0.0043(14) O2 0.0401(19) 0.045(2) 0.0305(18) -0.0168(16) -0.0118(14) 0.0044(16) O3 0.0350(18) 0.043(2) 0.0280(17) -0.0138(15) -0.0095(13) -0.0001(15) O4 0.044(2) 0.079(3) 0.056(2) -0.046(2) -0.0231(18) 0.030(2) O5 0.050(2) 0.063(3) 0.054(2) -0.019(2) -0.0055(19) 0.001(2) O6 0.165(9) 0.192(11) 0.188(9) -0.073(8) -0.035(7) -0.029(8) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cu Cu 0.3201 1.2651 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 O2 C1 O1 125.4(4) . . O2 C1 C2 119.7(4) . . O1 C1 C2 114.9(4) . . N1 C2 C3 121.4(4) . . N1 C2 C1 114.5(4) . . C3 C2 C1 124.0(4) . . C2 C3 C4 119.3(4) . . C2 C3 H3 120.3 . . C4 C3 H3 120.3 . . C5 C4 C3 119.6(4) . . C5 C4 H4 120.2 . . C3 C4 H4 120.2 . . C4 C5 C6 117.9(4) . . C4 C5 C7 121.6(4) . . C6 C5 C7 120.5(4) . . N1 C6 C5 122.3(4) . . N1 C6 H6 118.8 . . C5 C6 H6 118.8 . . O4 C7 O3 126.2(4) . . O4 C7 C5 116.9(4) . . O3 C7 C5 116.9(4) . . N2 C8 C9 121.3(5) . . N2 C8 H8 119.3 . . C9 C8 H8 119.3 . . C10 C9 C8 118.7(5) . . C10 C9 H9 120.6 . . C8 C9 H9 120.6 . . C9 C10 C11 120.6(5) . . C9 C10 H10 119.7 . . C11 C10 H10 119.7 . . C16 C11 C10 118.5(4) . . C16 C11 C12 117.7(4) . . C10 C11 C12 123.8(4) . . N3 C12 C13 120.8(4) . . N3 C12 C11 121.1(5) . . C13 C12 C11 118.1(4) . . C12 C13 C14 122.0(4) . . C12 C13 H13 119.0 . . C14 C13 H13 119.0 . . C15 C14 C13 121.9(5) . . C15 C14 H14 119.0 . . C13 C14 H14 119.0 . . C14 C15 C16 117.3(4) . . C14 C15 H15 121.4 . . C16 C15 H15 121.4 . . N2 C16 C15 119.0(4) . . N2 C16 C11 118.0(4) . . C15 C16 C11 123.0(4) . . O1 Cu1 O1 180.000(1) 2_666 . O1 Cu1 N1 83.33(13) 2_666 2_666 O1 Cu1 N1 96.67(13) . 2_666 O1 Cu1 N1 96.67(13) 2_666 . O1 Cu1 N1 83.33(13) . . N1 Cu1 N1 180.000(1) 2_666 . C6 N1 C2 119.4(4) . . C6 N1 Cu1 128.5(3) . . C2 N1 Cu1 112.1(3) . . C8 N2 C16 122.9(4) . . C8 N2 H2N 126(4) . . C16 N2 H2N 111(4) . . C12 N3 H3A 122(4) . . C12 N3 H3B 118(4) . . H3A N3 H3B 117(6) . . C1 O1 Cu1 114.6(3) . . loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 C1 O2 1.222(5) . C1 O1 1.286(5) . C1 C2 1.504(6) . C2 N1 1.349(5) . C2 C3 1.374(6) . C3 C4 1.388(7) . C3 H3 0.9300 . C4 C5 1.386(6) . C4 H4 0.9300 . C5 C6 1.389(6) . C5 C7 1.515(6) . C6 N1 1.342(6) . C6 H6 0.9300 . C7 O4 1.233(6) . C7 O3 1.259(5) . C8 N2 1.315(7) . C8 C9 1.381(8) . C8 H8 0.9300 . C9 C10 1.379(7) . C9 H9 0.9300 . C10 C11 1.409(7) . C10 H10 0.9300 . C11 C16 1.408(6) . C11 C12 1.437(6) . C12 N3 1.375(6) . C12 C13 1.381(7) . C13 C14 1.392(7) . C13 H13 0.9300 . C14 C15 1.362(7) . C14 H14 0.9300 . C15 C16 1.406(7) . C15 H15 0.9300 . C16 N2 1.382(6) . Cu1 O1 1.955(3) 2_666 Cu1 O1 1.955(3) . Cu1 N1 1.968(3) 2_666 Cu1 N1 1.968(3) . N2 H2N 0.95(2) . N3 H3A 0.97(7) . N3 H3B 0.94(8) . loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion _geom_torsion_site_symmetry_1 O2 C1 C2 N1 -177.4(4) . O1 C1 C2 N1 4.6(6) . O2 C1 C2 C3 5.1(7) . O1 C1 C2 C3 -172.9(4) . N1 C2 C3 C4 0.3(8) . C1 C2 C3 C4 177.6(4) . C2 C3 C4 C5 -0.6(8) . C3 C4 C5 C6 0.5(7) . C3 C4 C5 C7 -179.9(4) . C4 C5 C6 N1 -0.1(7) . C7 C5 C6 N1 -179.7(4) . C4 C5 C7 O4 -12.0(7) . C6 C5 C7 O4 167.6(5) . C4 C5 C7 O3 167.0(4) . C6 C5 C7 O3 -13.4(6) . N2 C8 C9 C10 1.5(8) . C8 C9 C10 C11 -1.3(7) . C9 C10 C11 C16 0.0(6) . C9 C10 C11 C12 179.6(4) . C16 C11 C12 N3 179.2(4) . C10 C11 C12 N3 -0.4(7) . C16 C11 C12 C13 -1.4(6) . C10 C11 C12 C13 179.0(4) . N3 C12 C13 C14 179.6(4) . C11 C12 C13 C14 0.2(6) . C12 C13 C14 C15 1.0(7) . C13 C14 C15 C16 -0.9(7) . C14 C15 C16 N2 179.6(4) . C14 C15 C16 C11 -0.4(7) . C10 C11 C16 N2 1.2(6) . C12 C11 C16 N2 -178.4(4) . C10 C11 C16 C15 -178.8(4) . C12 C11 C16 C15 1.5(6) . C5 C6 N1 C2 -0.2(6) . C5 C6 N1 Cu1 -178.6(3) . C3 C2 N1 C6 0.1(7) . C1 C2 N1 C6 -177.5(4) . C3 C2 N1 Cu1 178.8(4) . C1 C2 N1 Cu1 1.2(5) . O1 Cu1 N1 C6 -5.7(4) 2_666 O1 Cu1 N1 C6 174.3(4) . N1 Cu1 N1 C6 -152(100) 2_666 O1 Cu1 N1 C2 175.8(3) 2_666 O1 Cu1 N1 C2 -4.2(3) . N1 Cu1 N1 C2 30(100) 2_666 C9 C8 N2 C16 -0.3(7) . C15 C16 N2 C8 179.0(4) . C11 C16 N2 C8 -1.1(6) . O2 C1 O1 Cu1 174.0(4) . C2 C1 O1 Cu1 -8.1(5) . O1 Cu1 O1 C1 -104(100) 2_666 N1 Cu1 O1 C1 -172.9(3) 2_666 N1 Cu1 O1 C1 7.1(3) .