#------------------------------------------------------------------------------ #$Date: 2019-10-10 04:06:14 +0300 (Thu, 10 Oct 2019) $ #$Revision: 219233 $ #$URL: file:///home/coder/svn-repositories/cod/cif/7/70/13/7701341.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_7701341 loop_ _publ_author_name 'Kodrin, Ivan' 'Borovina, Mladen' '\ 2\s(I)' _cod_data_source_file c9dt03346g2.cif _cod_data_source_block 4b _cod_database_code 7701341 _shelx_shelxl_version_number 2018/3 _shelx_space_group_comment ; The symmetry employed for this shelxl refinement is uniquely defined by the following loop, which should always be used as a source of symmetry information in preference to the above space-group names. They are only intended as comments. ; _shelx_estimated_absorpt_t_max 0.844 _shelx_estimated_absorpt_t_min 0.668 _olex2_refinement_description ; 1. Fixed Uiso At 1.2 times of: All C(H) groups At 1.5 times of: All C(H,H,H) groups 2. Restrained distances O3-H3 0.81 with sigma of 0.01 C1-F1A = C1-F1B = C1-F2A = C1-F2B = C1-F3A = C1-F3B 1.32 with sigma of 0.005 F1A-F2A \\sim F1A-F3A \\sim F2A-F3A with sigma of 0.02 F1B-F2B \\sim F1B-F3B \\sim F2B-F3B with sigma of 0.04 3. Rigid body (RIGU) restrains C1, F1A, F2A, F3A, F1B, F2B, F3B with sigma for 1-2 distances of 0.004 and sigma for 1-3 distances of 0.004 4. Others Sof(F1B)=Sof(F2B)=Sof(F3B)=1-FVAR(1) Sof(F3A)=Sof(F1A)=Sof(F2A)=FVAR(1) 5.a Aromatic/amide H refined with riding coordinates: C9(H9), C10(H10), C6(H6), C7(H7), C3(H3A) 5.b Idealised Me refined as rotating group: C5(H5A,H5B,H5C), C12(H12A,H12B,H12C) ; _shelx_res_file ; TITL exp_2400_a.res in P-1 exp_2400.res created by SHELXL-2018/3 at 13:15:41 on 11-Jul-2019 REM Old TITL exp_2400 in P-1 REM SHELXT solution in P-1 REM R1 0.153, Rweak 0.035, Alpha 0.074, Orientation as input REM Formula found by SHELXT: C32 N6 O4 Cu CELL 0.71073 8.5478 9.2084 10.0669 114.584 99.527 98.514 ZERR 1 0.0004 0.0004 0.0005 0.004 0.004 0.004 LATT 1 SFAC C H Cu F N O UNIT 24 24 1 6 4 6 EQIV $1 +X,1+Y,1+Z DFIX 0.81 0.01 O3 H3 DFIX 1.32 0.005 C1 F1A C1 F1B C1 F2A C1 F2B C1 F3A C1 F3B SADI F1A F2A F1A F3A F2A F3A SADI 0.04 F1B F2B F1B F3B F2B F3B RIGU C1 F1A F2A F3A F1B F2B F3B L.S. 4 PLAN 20 SIZE 0.2 0.25 0.5 TEMP 23 HTAB O3 O2_$1 htab BOND $H list 4 fmap 2 acta OMIT -1 52 REM REM REM WGHT 0.049600 0.128200 FVAR 0.88936 0.61085 CU1 3 0.500000 0.500000 0.500000 10.50000 0.05255 0.04380 = 0.04038 0.01949 0.01721 0.01137 O2 6 0.720574 0.384875 0.494930 11.00000 0.05632 0.05180 = 0.05099 0.02048 0.01805 0.01431 O1 6 0.440643 0.407548 0.634478 11.00000 0.06343 0.05274 = 0.04810 0.02524 0.02152 0.01328 N1 5 0.633920 0.714314 0.683508 11.00000 0.04832 0.04845 = 0.04529 0.02222 0.01980 0.01434 O3 6 0.887455 1.382324 1.282838 11.00000 0.07617 0.05149 = 0.06271 0.00773 0.02600 0.00060 N2 5 0.815130 1.223686 1.169567 11.00000 0.05466 0.04720 = 0.05366 0.01438 0.01531 0.00746 C8 1 0.794260 1.024159 0.925974 11.00000 0.04280 0.04628 = 0.04627 0.02506 0.01345 0.01556 C11 1 0.870417 1.191306 1.051465 11.00000 0.04895 0.04746 = 0.05278 0.02692 0.01362 0.01401 C9 1 0.662982 0.920834 0.934197 11.00000 0.05608 0.05073 = 0.04651 0.02183 0.02408 0.01461 AFIX 43 H9 2 0.626798 0.954018 1.022051 11.00000 -1.20000 AFIX 0 C10 1 0.587263 0.771207 0.813982 11.00000 0.05207 0.04848 = 0.05006 0.02125 0.02177 0.00796 AFIX 43 H10 2 0.499553 0.705634 0.822557 11.00000 -1.20000 AFIX 0 C6 1 0.763100 0.809324 0.677101 11.00000 0.04976 0.06290 = 0.04527 0.02340 0.02143 0.01486 AFIX 43 H6 2 0.800071 0.770322 0.589753 11.00000 -1.20000 AFIX 0 C7 1 0.845235 0.962306 0.792623 11.00000 0.04521 0.05727 = 0.05250 0.02849 0.01917 0.00956 AFIX 43 H7 2 0.934211 1.023954 0.781664 11.00000 -1.20000 AFIX 0 C4 1 0.747004 0.297755 0.558341 11.00000 0.05300 0.04793 = 0.05803 0.02007 0.00679 0.00972 C2 1 0.510960 0.315477 0.674568 11.00000 0.06118 0.05588 = 0.04595 0.02677 0.00727 0.00100 PART 1 F3A 4 0.265798 0.182799 0.694103 21.00000 0.07984 0.11044 = 0.14144 0.08091 0.03370 -0.00890 PART 0 C3 1 0.647903 0.262107 0.646094 11.00000 0.06693 0.08274 = 0.08692 0.05907 0.01995 0.02386 AFIX 43 H3A 2 0.679681 0.195361 0.688636 11.00000 -1.20000 AFIX 0 C5 1 0.894507 0.226410 0.543187 11.00000 0.06965 0.07781 = 0.10614 0.04634 0.02550 0.03015 AFIX 137 H5A 2 0.905713 0.190238 0.441756 11.00000 -1.50000 H5B 2 0.881206 0.134601 0.565957 11.00000 -1.50000 H5C 2 0.990584 0.308931 0.612193 11.00000 -1.50000 AFIX 0 C12 1 0.998540 1.308809 1.036679 11.00000 0.08923 0.05495 = 0.06923 0.02677 0.02274 -0.00477 AFIX 137 H12A 2 1.043569 1.404081 1.132530 11.00000 -1.50000 H12B 2 0.950673 1.341577 0.963581 11.00000 -1.50000 H12C 2 1.083753 1.256318 1.004419 11.00000 -1.50000 AFIX 0 PART 1 F1A 4 0.406256 0.371680 0.888111 21.00000 0.32103 0.16272 = 0.07838 0.01014 0.10578 -0.06246 PART 0 C1 1 0.421194 0.256348 0.767993 11.00000 0.09063 0.09678 = 0.08443 0.06193 0.02820 0.01272 PART 1 F2A 4 0.470786 0.140736 0.793017 21.00000 0.15702 0.30898 = 0.34245 0.30367 0.14897 0.13654 PART 0 H3 2 0.840401 1.386020 1.346549 11.00000 0.09581 PART 2 F1B 4 0.331472 0.351782 0.833958 -21.00000 0.11788 0.24380 = 0.17331 0.17363 0.10229 0.09892 F2B 4 0.522069 0.277271 0.892616 -21.00000 0.14775 0.14289 = 0.07103 0.07766 0.04661 0.05070 F3B 4 0.350947 0.102843 0.703248 -21.00000 0.44467 0.08582 = 0.13670 -0.00244 0.13399 -0.13043 HKLF 4 REM exp_2400_a.res in P-1 REM wR2 = 0.0952, GooF = S = 1.104, Restrained GooF = 1.170 for all data REM R1 = 0.0336 for 2552 Fo > 4sig(Fo) and 0.0369 for all 2713 data REM 221 parameters refined using 49 restraints END WGHT 0.0496 0.1282 REM Instructions for potential hydrogen bonds EQIV $3 -x+1, -y+1, -z+2 HTAB C9 F2A_$3 HTAB C10 O1 EQIV $4 -x+2, -y+2, -z+2 HTAB C5 O3_$4 HTAB O3 O2_$1 REM Highest difference peak 0.243, deepest hole -0.228, 1-sigma level 0.043 Q1 1 0.4516 0.0974 0.7240 11.00000 0.05 0.24 Q2 1 1.0057 1.2929 0.9368 11.00000 0.05 0.21 Q3 1 0.9551 1.4164 1.0579 11.00000 0.05 0.19 Q4 1 0.2937 0.2702 0.7366 11.00000 0.05 0.19 Q5 1 0.9730 0.2862 0.5105 11.00000 0.05 0.18 Q6 1 0.5284 0.3649 0.8967 11.00000 0.05 0.17 Q7 1 0.9268 1.2261 1.0325 11.00000 0.05 0.17 Q8 1 0.9721 0.2599 0.6715 11.00000 0.05 0.16 Q9 1 0.5659 0.2414 0.8526 11.00000 0.05 0.16 Q10 1 0.3929 0.3130 0.8269 11.00000 0.05 0.16 Q11 1 0.5974 0.7523 0.7405 11.00000 0.05 0.15 Q12 1 0.6072 0.3284 0.6997 11.00000 0.05 0.15 Q13 1 0.6699 0.8382 0.8940 11.00000 0.05 0.15 Q14 1 0.6317 0.2437 0.5619 11.00000 0.05 0.14 Q15 1 0.8114 1.2264 1.0797 11.00000 0.05 0.14 Q16 1 0.8065 0.9994 0.8595 11.00000 0.05 0.14 Q17 1 0.4582 0.2982 0.6152 11.00000 0.05 0.14 Q18 1 0.7176 0.9924 0.9184 11.00000 0.05 0.13 Q19 1 0.6471 0.3359 0.4438 11.00000 0.05 0.13 Q20 1 0.8563 1.0944 1.0025 11.00000 0.05 0.13 ; _shelx_res_checksum 76639 loop_ _space_group_symop_operation_xyz 'x, y, z' '-x, -y, -z' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_site_symmetry_order _atom_site_calc_flag _atom_site_refinement_flags_posn _atom_site_refinement_flags_adp _atom_site_refinement_flags_occupancy _atom_site_disorder_assembly _atom_site_disorder_group Cu1 Cu 0.500000 0.500000 0.500000 0.04472(14) Uani 1 2 d S T P . . O2 O 0.72057(18) 0.38488(18) 0.49493(17) 0.0533(4) Uani 1 1 d . . . . . O1 O 0.44064(19) 0.40755(18) 0.63448(16) 0.0530(4) Uani 1 1 d . . . . . N1 N 0.6339(2) 0.7143(2) 0.68351(18) 0.0456(4) Uani 1 1 d . . . . . O3 O 0.8875(2) 1.3823(2) 1.2828(2) 0.0705(5) Uani 1 1 d D . . . . N2 N 0.8151(2) 1.2237(2) 1.1696(2) 0.0552(4) Uani 1 1 d . . . . . C8 C 0.7943(2) 1.0242(2) 0.9260(2) 0.0428(4) Uani 1 1 d . . . . . C11 C 0.8704(3) 1.1913(2) 1.0515(2) 0.0478(5) Uani 1 1 d . . . . . C9 C 0.6630(3) 0.9208(3) 0.9342(2) 0.0495(5) Uani 1 1 d . . . . . H9 H 0.626798 0.954018 1.022051 0.059 Uiso 1 1 calc R . . . . C10 C 0.5873(3) 0.7712(3) 0.8140(2) 0.0499(5) Uani 1 1 d . . . . . H10 H 0.499553 0.705634 0.822557 0.060 Uiso 1 1 calc R . . . . C6 C 0.7631(3) 0.8093(3) 0.6771(2) 0.0516(5) Uani 1 1 d . . . . . H6 H 0.800071 0.770322 0.589753 0.062 Uiso 1 1 calc R . . . . C7 C 0.8452(3) 0.9623(3) 0.7926(2) 0.0498(5) Uani 1 1 d . . . . . H7 H 0.934211 1.023954 0.781664 0.060 Uiso 1 1 calc R . . . . C4 C 0.7470(3) 0.2978(3) 0.5583(3) 0.0556(5) Uani 1 1 d . . . . . C2 C 0.5110(3) 0.3155(3) 0.6746(2) 0.0553(5) Uani 1 1 d . . . . . F3A F 0.2658(4) 0.1828(7) 0.6941(6) 0.1050(17) Uani 0.611(9) 1 d D U . A 1 C3 C 0.6479(3) 0.2621(4) 0.6461(3) 0.0707(7) Uani 1 1 d . . . . . H3A H 0.679681 0.195361 0.688636 0.085 Uiso 1 1 calc R . . . . C5 C 0.8945(3) 0.2264(4) 0.5432(4) 0.0809(8) Uani 1 1 d . . . . . H5A H 0.905713 0.190238 0.441756 0.121 Uiso 1 1 calc GR . . . . H5B H 0.881206 0.134601 0.565957 0.121 Uiso 1 1 calc GR . . . . H5C H 0.990584 0.308931 0.612193 0.121 Uiso 1 1 calc GR . . . . C12 C 0.9985(4) 1.3088(3) 1.0367(3) 0.0738(7) Uani 1 1 d . . . . . H12A H 1.043569 1.404081 1.132530 0.111 Uiso 1 1 calc GR . . . . H12B H 0.950673 1.341577 0.963581 0.111 Uiso 1 1 calc GR . . . . H12C H 1.083753 1.256318 1.004419 0.111 Uiso 1 1 calc GR . . . . F1A F 0.4063(12) 0.3717(8) 0.8881(7) 0.210(5) Uani 0.611(9) 1 d D U . A 1 C1 C 0.4212(4) 0.2563(3) 0.7680(3) 0.0835(8) Uani 1 1 d D U . . . F2A F 0.4708(8) 0.1407(12) 0.7930(13) 0.193(5) Uani 0.611(9) 1 d D U . A 1 H3 H 0.840(4) 1.386(4) 1.347(3) 0.096(11) Uiso 1 1 d D . . . . F1B F 0.3315(11) 0.3518(13) 0.8340(10) 0.135(5) Uani 0.389(9) 1 d D U . A 2 F2B F 0.5221(9) 0.2773(11) 0.8926(6) 0.106(3) Uani 0.389(9) 1 d D U . A 2 F3B F 0.351(2) 0.1028(9) 0.7032(12) 0.256(10) Uani 0.389(9) 1 d D U . A 2 loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 Cu1 0.0525(2) 0.0438(2) 0.0404(2) 0.01949(15) 0.01721(15) 0.01137(15) O2 0.0563(8) 0.0518(8) 0.0510(8) 0.0205(7) 0.0181(7) 0.0143(7) O1 0.0634(9) 0.0527(8) 0.0481(8) 0.0252(7) 0.0215(7) 0.0133(7) N1 0.0483(9) 0.0484(9) 0.0453(9) 0.0222(7) 0.0198(7) 0.0143(7) O3 0.0762(12) 0.0515(9) 0.0627(11) 0.0077(8) 0.0260(9) 0.0006(8) N2 0.0547(10) 0.0472(10) 0.0537(10) 0.0144(8) 0.0153(8) 0.0075(8) C8 0.0428(10) 0.0463(10) 0.0463(10) 0.0251(9) 0.0134(8) 0.0156(8) C11 0.0490(11) 0.0475(11) 0.0528(11) 0.0269(9) 0.0136(9) 0.0140(9) C9 0.0561(12) 0.0507(11) 0.0465(11) 0.0218(9) 0.0241(9) 0.0146(9) C10 0.0521(11) 0.0485(11) 0.0501(11) 0.0213(9) 0.0218(9) 0.0080(9) C6 0.0498(11) 0.0629(13) 0.0453(11) 0.0234(10) 0.0214(9) 0.0149(10) C7 0.0452(11) 0.0573(12) 0.0525(11) 0.0285(10) 0.0192(9) 0.0096(9) C4 0.0530(12) 0.0479(11) 0.0580(13) 0.0201(10) 0.0068(10) 0.0097(9) C2 0.0612(13) 0.0559(12) 0.0459(11) 0.0268(10) 0.0073(10) 0.0010(10) F3A 0.080(2) 0.110(4) 0.141(4) 0.081(3) 0.034(2) -0.009(2) C3 0.0669(15) 0.0827(17) 0.0869(18) 0.0591(16) 0.0199(13) 0.0239(13) C5 0.0696(17) 0.0778(18) 0.106(2) 0.0463(17) 0.0255(16) 0.0302(14) C12 0.0892(19) 0.0549(14) 0.0692(16) 0.0268(12) 0.0227(14) -0.0048(13) F1A 0.321(12) 0.163(6) 0.078(3) 0.010(3) 0.106(5) -0.062(6) C1 0.091(2) 0.097(2) 0.084(2) 0.0619(18) 0.0282(16) 0.0127(17) F2A 0.157(6) 0.309(10) 0.342(11) 0.304(10) 0.149(7) 0.137(7) F1B 0.118(6) 0.244(12) 0.173(9) 0.174(9) 0.102(6) 0.099(8) F2B 0.148(5) 0.143(7) 0.071(3) 0.078(4) 0.047(3) 0.051(5) F3B 0.44(2) 0.086(5) 0.137(8) -0.002(5) 0.134(11) -0.130(9) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' Cu Cu 0.3201 1.2651 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' F F 0.0171 0.0103 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' O O 0.0106 0.0060 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle _geom_angle_site_symmetry_1 _geom_angle_site_symmetry_3 O2 Cu1 O2 180.0 . 2_666 O1 Cu1 O2 87.62(6) 2_666 2_666 O1 Cu1 O2 87.63(6) . . O1 Cu1 O2 92.38(6) . 2_666 O1 Cu1 O2 92.38(6) 2_666 . O1 Cu1 O1 180.0 . 2_666 O1 Cu1 N1 89.63(6) 2_666 . O1 Cu1 N1 90.37(6) . . O1 Cu1 N1 89.63(6) . 2_666 O1 Cu1 N1 90.37(6) 2_666 2_666 N1 Cu1 O2 91.33(6) 2_666 2_666 N1 Cu1 O2 88.67(6) 2_666 . N1 Cu1 O2 88.67(6) . 2_666 N1 Cu1 O2 91.33(6) . . N1 Cu1 N1 180.0 2_666 . C4 O2 Cu1 123.56(15) . . C2 O1 Cu1 126.93(15) . . C10 N1 Cu1 120.91(14) . . C6 N1 Cu1 122.17(13) . . C6 N1 C10 116.75(18) . . N2 O3 H3 101(3) . . C11 N2 O3 112.26(18) . . C9 C8 C11 121.08(18) . . C7 C8 C11 122.77(19) . . C7 C8 C9 116.13(19) . . N2 C11 C8 114.25(19) . . N2 C11 C12 124.5(2) . . C8 C11 C12 121.27(19) . . C8 C9 H9 119.8 . . C10 C9 C8 120.49(19) . . C10 C9 H9 119.8 . . N1 C10 C9 123.05(19) . . N1 C10 H10 118.5 . . C9 C10 H10 118.5 . . N1 C6 H6 118.1 . . N1 C6 C7 123.76(19) . . C7 C6 H6 118.1 . . C8 C7 H7 120.1 . . C6 C7 C8 119.73(19) . . C6 C7 H7 120.1 . . O2 C4 C3 124.1(2) . . O2 C4 C5 118.2(2) . . C3 C4 C5 117.7(2) . . O1 C2 C3 130.8(2) . . O1 C2 C1 111.8(2) . . C3 C2 C1 117.4(2) . . C4 C3 H3A 116.6 . . C2 C3 C4 126.8(2) . . C2 C3 H3A 116.6 . . C4 C5 H5A 109.5 . . C4 C5 H5B 109.5 . . C4 C5 H5C 109.5 . . H5A C5 H5B 109.5 . . H5A C5 H5C 109.5 . . H5B C5 H5C 109.5 . . C11 C12 H12A 109.5 . . C11 C12 H12B 109.5 . . C11 C12 H12C 109.5 . . H12A C12 H12B 109.5 . . H12A C12 H12C 109.5 . . H12B C12 H12C 109.5 . . F3A C1 C2 110.7(3) . . F1A C1 C2 114.3(4) . . F1A C1 F3A 101.4(5) . . F1A C1 F2A 112.0(5) . . F2A C1 C2 115.2(3) . . F2A C1 F3A 101.6(4) . . F1B C1 C2 113.4(5) . . F1B C1 F2B 96.6(5) . . F2B C1 C2 111.6(4) . . F3B C1 C2 115.1(5) . . F3B C1 F1B 114.4(9) . . F3B C1 F2B 103.8(8) . . loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance _geom_bond_site_symmetry_2 Cu1 O2 2.2935(15) 2_666 Cu1 O2 2.2935(15) . Cu1 O1 1.9681(14) . Cu1 O1 1.9681(14) 2_666 Cu1 N1 2.0531(17) 2_666 Cu1 N1 2.0531(17) . O2 C4 1.239(3) . O1 C2 1.264(3) . N1 C10 1.350(2) . N1 C6 1.332(3) . O3 N2 1.389(2) . O3 H3 0.803(10) . N2 C11 1.288(3) . C8 C11 1.484(3) . C8 C9 1.397(3) . C8 C7 1.395(3) . C11 C12 1.493(3) . C9 H9 0.9300 . C9 C10 1.368(3) . C10 H10 0.9300 . C6 H6 0.9300 . C6 C7 1.380(3) . C7 H7 0.9300 . C4 C3 1.419(4) . C4 C5 1.507(3) . C2 C3 1.363(4) . C2 C1 1.520(3) . F3A C1 1.328(4) . C3 H3A 0.9300 . C5 H5A 0.9600 . C5 H5B 0.9600 . C5 H5C 0.9600 . C12 H12A 0.9600 . C12 H12B 0.9600 . C12 H12C 0.9600 . F1A C1 1.276(4) . C1 F2A 1.303(4) . C1 F1B 1.298(5) . C1 F2B 1.321(4) . C1 F3B 1.279(4) . loop_ _geom_hbond_atom_site_label_D _geom_hbond_atom_site_label_H _geom_hbond_atom_site_label_A _geom_hbond_distance_DH _geom_hbond_distance_HA _geom_hbond_distance_DA _geom_hbond_angle_DHA _geom_hbond_site_symmetry_A _geom_hbond_publ_flag O3 H3 O2 0.803(10) 1.949(10) 2.751(2) 177(4) 1_566 yes