#------------------------------------------------------------------------------ #$Date: 2011-11-02 19:55:35 +0200 (Wed, 02 Nov 2011) $ #$Revision: 29022 $ #$URL: file:///home/coder/svn-repositories/cod/cif/8/8103097.cif $ #------------------------------------------------------------------------------ # # This file is available in the Crystallography Open Database (COD), # http://www.crystallography.net/ # # All data on this site have been placed in the public domain by the # contributors. # data_8103097 loop_ _publ_author_name 'Hong-Mei Li' 'Chen Xu' 'Hu Liu' 'Zhi-Qiang Zhang' 'Jing-Cai Yao' 'Yu-Qing Zhang' _publ_section_title ; Crystal structure of 1-(4,6-dimethylpyrimidin-2-yl)benzimidazole, C13H12N4 ; _journal_issue 1 _journal_name_full 'Zeitschrift f\"ur Kristallographie - New Crystal Structures' _journal_page_first 89 _journal_volume 226 _journal_year 2011 _chemical_formula_sum 'C13 H12 N4' _chemical_formula_weight 224.27 _chemical_name_systematic ; ? ; _space_group_IT_number 14 _symmetry_cell_setting monoclinic _symmetry_space_group_name_Hall '-P 2ybc' _symmetry_space_group_name_H-M 'P 1 21/c 1' _atom_sites_solution_hydrogens geom _atom_sites_solution_primary direct _atom_sites_solution_secondary difmap _audit_creation_method SHELXL-97 _cell_angle_alpha 90.00 _cell_angle_beta 90.649(2) _cell_angle_gamma 90.00 _cell_formula_units_Z 4 _cell_length_a 8.6824(14) _cell_length_b 17.542(3) _cell_length_c 7.5710(12) _cell_measurement_reflns_used 1124 _cell_measurement_temperature 296(2) _cell_measurement_theta_max 20.29 _cell_measurement_theta_min 2.32 _cell_volume 1153.0(3) _computing_cell_refinement 'Bruker SMART' _computing_data_collection 'Bruker SMART' _computing_data_reduction 'Bruker SAINT' _computing_molecular_graphics 'Bruker SHELXTL' _computing_publication_material 'Bruker SHELXTL' _computing_structure_refinement 'SHELXL-97 (Sheldrick, 1997)' _computing_structure_solution 'SHELXS-97 (Sheldrick, 1990)' _diffrn_ambient_temperature 296(2) _diffrn_measured_fraction_theta_full 0.999 _diffrn_measured_fraction_theta_max 0.999 _diffrn_measurement_device_type 'CCD area detector' _diffrn_measurement_method 'phi and omega scans' _diffrn_radiation_monochromator graphite _diffrn_radiation_source 'fine-focus sealed tube' _diffrn_radiation_type MoK\a _diffrn_radiation_wavelength 0.71073 _diffrn_reflns_av_R_equivalents 0.0391 _diffrn_reflns_av_sigmaI/netI 0.0370 _diffrn_reflns_limit_h_max 10 _diffrn_reflns_limit_h_min -10 _diffrn_reflns_limit_k_max 20 _diffrn_reflns_limit_k_min -21 _diffrn_reflns_limit_l_max 9 _diffrn_reflns_limit_l_min -9 _diffrn_reflns_number 8476 _diffrn_reflns_theta_full 25.50 _diffrn_reflns_theta_max 25.50 _diffrn_reflns_theta_min 2.32 _diffrn_standards_decay_% 0 _diffrn_standards_interval_count 0 _diffrn_standards_interval_time 0 _diffrn_standards_number 0 _exptl_absorpt_coefficient_mu 0.082 _exptl_absorpt_correction_T_max 0.9935 _exptl_absorpt_correction_T_min 0.9799 _exptl_absorpt_correction_type multi-scan _exptl_absorpt_process_details sadabs _exptl_crystal_colour yellow _exptl_crystal_density_diffrn 1.292 _exptl_crystal_density_method 'not measured' _exptl_crystal_description block _exptl_crystal_F_000 472 _exptl_crystal_size_max 0.25 _exptl_crystal_size_mid 0.19 _exptl_crystal_size_min 0.08 _refine_diff_density_max 0.156 _refine_diff_density_min -0.137 _refine_diff_density_rms 0.032 _refine_ls_extinction_coef 0.014(2) _refine_ls_extinction_expression Fc^*^=kFc[1+0.001xFc^2^\l^3^/sin(2\q)]^-1/4^ _refine_ls_extinction_method SHELXL _refine_ls_goodness_of_fit_ref 1.023 _refine_ls_hydrogen_treatment constr _refine_ls_matrix_type full _refine_ls_number_parameters 155 _refine_ls_number_reflns 2143 _refine_ls_number_restraints 0 _refine_ls_restrained_S_all 1.023 _refine_ls_R_factor_all 0.0784 _refine_ls_R_factor_gt 0.0429 _refine_ls_shift/su_max 0.000 _refine_ls_shift/su_mean 0.000 _refine_ls_structure_factor_coef Fsqd _refine_ls_weighting_details 'calc w=1/[\s^2^(Fo^2^)+(0.0479P)^2^+0.0852P] where P=(Fo^2^+2Fc^2^)/3' _refine_ls_weighting_scheme calc _refine_ls_wR_factor_gt 0.0949 _refine_ls_wR_factor_ref 0.1107 _reflns_number_gt 1364 _reflns_number_total 2143 _reflns_threshold_expression >2sigma(I) _[local]_cod_data_source_file 1267-3293.cff _[local]_cod_data_source_block a _[local]_cod_cif_authors_sg_H-M P2(1)/c _cod_depositor_comments ; The following automatic conversions were performed: '_symmetry_cell_setting' value 'Monoclinic' changed to 'monoclinic' according to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary named 'cif_core.dic' version 2.4.1 from 2010-06-29. Automatic conversion script Id: cif_fix_values 1715 2011-07-08 13:25:40Z adriana ; _cod_database_code 8103097 loop_ _symmetry_equiv_pos_as_xyz 'x, y, z' '-x, y+1/2, -z+1/2' '-x, -y, -z' 'x, -y-1/2, z-1/2' loop_ _atom_site_label _atom_site_type_symbol _atom_site_fract_x _atom_site_fract_y _atom_site_fract_z _atom_site_U_iso_or_equiv _atom_site_adp_type _atom_site_occupancy _atom_site_symmetry_multiplicity _atom_site_calc_flag _atom_site_refinement_flags C1 C -0.0056(2) 0.34236(11) 0.5758(3) 0.0587(5) Uani 1 1 d . H1 H -0.1120 0.3435 0.5880 0.070 Uiso 1 1 calc R C2 C 0.2208(2) 0.30652(10) 0.5139(2) 0.0526(5) Uani 1 1 d . C3 C 0.3491(3) 0.26648(12) 0.4577(3) 0.0669(6) Uani 1 1 d . H3 H 0.3388 0.2192 0.4031 0.080 Uiso 1 1 calc R C4 C 0.4913(3) 0.29852(13) 0.4848(3) 0.0742(7) Uani 1 1 d . H4 H 0.5788 0.2723 0.4493 0.089 Uiso 1 1 calc R C5 C 0.5075(2) 0.36971(13) 0.5648(3) 0.0732(7) Uani 1 1 d . H5 H 0.6055 0.3900 0.5816 0.088 Uiso 1 1 calc R C6 C 0.3809(2) 0.41084(12) 0.6198(3) 0.0604(5) Uani 1 1 d . H6 H 0.3915 0.4585 0.6722 0.073 Uiso 1 1 calc R C7 C 0.2381(2) 0.37794(10) 0.5934(2) 0.0475(5) Uani 1 1 d . C8 C 0.0378(2) 0.46944(9) 0.7121(2) 0.0447(5) Uani 1 1 d . C9 C -0.1603(2) 0.53861(10) 0.8165(2) 0.0500(5) Uani 1 1 d . C10 C -0.0567(2) 0.59446(10) 0.8635(2) 0.0524(5) Uani 1 1 d . H10 H -0.0903 0.6391 0.9169 0.063 Uiso 1 1 calc R C11 C 0.0970(2) 0.58356(10) 0.8310(2) 0.0501(5) Uani 1 1 d . C12 C -0.3290(2) 0.54583(12) 0.8510(3) 0.0678(6) Uani 1 1 d . H12A H -0.3814 0.5011 0.8087 0.102 Uiso 0.50 1 calc PR H12B H -0.3689 0.5899 0.7908 0.102 Uiso 0.50 1 calc PR H12C H -0.3451 0.5511 0.9757 0.102 Uiso 0.50 1 calc PR H12D H -0.3489 0.5937 0.9081 0.102 Uiso 0.50 1 calc PR H12E H -0.3614 0.5048 0.9260 0.102 Uiso 0.50 1 calc PR H12F H -0.3851 0.5436 0.7411 0.102 Uiso 0.50 1 calc PR C13 C 0.2167(2) 0.64076(11) 0.8815(3) 0.0744(7) Uani 1 1 d . H13A H 0.3163 0.6225 0.8476 0.112 Uiso 0.50 1 calc PR H13B H 0.2153 0.6485 1.0070 0.112 Uiso 0.50 1 calc PR H13C H 0.1955 0.6881 0.8225 0.112 Uiso 0.50 1 calc PR H13D H 0.1685 0.6836 0.9372 0.112 Uiso 0.50 1 calc PR H13E H 0.2694 0.6575 0.7778 0.112 Uiso 0.50 1 calc PR H13F H 0.2892 0.6180 0.9623 0.112 Uiso 0.50 1 calc PR N1 N 0.08850(16) 0.40104(8) 0.63249(19) 0.0480(4) Uani 1 1 d . N2 N 0.0658(2) 0.28553(9) 0.5043(2) 0.0637(5) Uani 1 1 d . N3 N -0.11325(16) 0.47413(8) 0.73766(19) 0.0493(4) Uani 1 1 d . N4 N 0.14687(16) 0.51916(8) 0.7526(2) 0.0500(4) Uani 1 1 d . loop_ _atom_site_aniso_label _atom_site_aniso_U_11 _atom_site_aniso_U_22 _atom_site_aniso_U_33 _atom_site_aniso_U_23 _atom_site_aniso_U_13 _atom_site_aniso_U_12 C1 0.0571(13) 0.0534(13) 0.0655(14) -0.0001(10) 0.0000(10) -0.0093(10) C2 0.0645(13) 0.0442(11) 0.0491(12) 0.0033(9) 0.0009(9) 0.0037(10) C3 0.0891(17) 0.0507(13) 0.0611(14) -0.0020(10) 0.0065(12) 0.0123(12) C4 0.0715(16) 0.0735(16) 0.0777(16) 0.0032(13) 0.0125(12) 0.0255(13) C5 0.0553(14) 0.0787(16) 0.0855(17) -0.0040(13) 0.0026(12) 0.0103(12) C6 0.0520(12) 0.0595(13) 0.0697(14) -0.0045(11) 0.0000(10) 0.0042(10) C7 0.0489(12) 0.0474(11) 0.0462(11) 0.0033(9) 0.0023(8) 0.0042(9) C8 0.0480(11) 0.0433(11) 0.0428(10) 0.0042(8) 0.0001(8) -0.0016(9) C9 0.0479(11) 0.0548(12) 0.0471(11) 0.0051(10) -0.0005(8) 0.0044(9) C10 0.0540(12) 0.0481(11) 0.0551(12) 0.0009(9) 0.0042(9) 0.0050(9) C11 0.0536(12) 0.0434(11) 0.0534(12) 0.0033(9) 0.0024(9) -0.0021(9) C12 0.0505(13) 0.0778(15) 0.0752(15) -0.0041(12) 0.0028(10) 0.0066(11) C13 0.0673(14) 0.0579(13) 0.0981(18) -0.0124(12) 0.0068(12) -0.0105(11) N1 0.0477(9) 0.0423(9) 0.0540(9) -0.0020(7) 0.0004(7) -0.0022(7) N2 0.0756(13) 0.0479(10) 0.0676(12) -0.0038(8) 0.0041(9) -0.0055(9) N3 0.0435(9) 0.0539(10) 0.0505(10) 0.0014(8) -0.0007(7) -0.0003(7) N4 0.0485(9) 0.0459(9) 0.0558(10) -0.0002(8) 0.0029(7) -0.0027(7) loop_ _atom_type_symbol _atom_type_description _atom_type_scat_dispersion_real _atom_type_scat_dispersion_imag _atom_type_scat_source C C 0.0033 0.0016 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' H H 0.0000 0.0000 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' N N 0.0061 0.0033 'International Tables Vol C Tables 4.2.6.8 and 6.1.1.4' loop_ _geom_angle_atom_site_label_1 _geom_angle_atom_site_label_2 _geom_angle_atom_site_label_3 _geom_angle N2 C1 N1 114.81(18) N2 C1 H1 122.6 N1 C1 H1 122.6 C3 C2 N2 128.84(19) C3 C2 C7 120.18(19) N2 C2 C7 110.98(16) C4 C3 C2 118.1(2) C4 C3 H3 120.9 C2 C3 H3 120.9 C3 C4 C5 121.2(2) C3 C4 H4 119.4 C5 C4 H4 119.4 C6 C5 C4 121.5(2) C6 C5 H5 119.3 C4 C5 H5 119.3 C7 C6 C5 116.98(19) C7 C6 H6 121.5 C5 C6 H6 121.5 C6 C7 N1 133.20(17) C6 C7 C2 121.99(18) N1 C7 C2 104.81(16) N4 C8 N3 129.09(16) N4 C8 N1 115.67(15) N3 C8 N1 115.23(15) N3 C9 C10 120.88(17) N3 C9 C12 116.86(17) C10 C9 C12 122.26(18) C11 C10 C9 119.27(18) C11 C10 H10 120.4 C9 C10 H10 120.4 N4 C11 C10 120.85(17) N4 C11 C13 116.73(17) C10 C11 C13 122.41(18) C9 C12 H12A 109.5 C9 C12 H12B 109.5 H12A C12 H12B 109.5 C9 C12 H12C 109.5 H12A C12 H12C 109.5 H12B C12 H12C 109.5 C9 C12 H12D 109.5 H12A C12 H12D 141.1 H12B C12 H12D 56.3 H12C C12 H12D 56.3 C9 C12 H12E 109.5 H12A C12 H12E 56.3 H12B C12 H12E 141.1 H12C C12 H12E 56.3 H12D C12 H12E 109.5 C9 C12 H12F 109.5 H12A C12 H12F 56.3 H12B C12 H12F 56.3 H12C C12 H12F 141.1 H12D C12 H12F 109.5 H12E C12 H12F 109.5 C11 C13 H13A 109.5 C11 C13 H13B 109.5 H13A C13 H13B 109.5 C11 C13 H13C 109.5 H13A C13 H13C 109.5 H13B C13 H13C 109.5 C11 C13 H13D 109.5 H13A C13 H13D 141.1 H13B C13 H13D 56.3 H13C C13 H13D 56.3 C11 C13 H13E 109.5 H13A C13 H13E 56.3 H13B C13 H13E 141.1 H13C C13 H13E 56.3 H13D C13 H13E 109.5 C11 C13 H13F 109.5 H13A C13 H13F 56.3 H13B C13 H13F 56.3 H13C C13 H13F 141.1 H13D C13 H13F 109.5 H13E C13 H13F 109.5 C1 N1 C7 105.47(15) C1 N1 C8 125.40(16) C7 N1 C8 129.14(15) C1 N2 C2 103.93(15) C8 N3 C9 114.94(15) C8 N4 C11 114.96(15) loop_ _geom_bond_atom_site_label_1 _geom_bond_atom_site_label_2 _geom_bond_distance C1 N2 1.296(2) C1 N1 1.380(2) C1 H1 0.9300 C2 C3 1.388(3) C2 N2 1.396(2) C2 C7 1.397(2) C3 C4 1.370(3) C3 H3 0.9300 C4 C5 1.394(3) C4 H4 0.9300 C5 C6 1.383(3) C5 H5 0.9300 C6 C7 1.380(2) C6 H6 0.9300 C7 N1 1.396(2) C8 N4 1.321(2) C8 N3 1.331(2) C8 N1 1.415(2) C9 N3 1.345(2) C9 C10 1.374(2) C9 C12 1.496(2) C10 C11 1.373(2) C10 H10 0.9300 C11 N4 1.350(2) C11 C13 1.492(3) C12 H12A 0.9600 C12 H12B 0.9600 C12 H12C 0.9600 C12 H12D 0.9600 C12 H12E 0.9600 C12 H12F 0.9600 C13 H13A 0.9600 C13 H13B 0.9600 C13 H13C 0.9600 C13 H13D 0.9600 C13 H13E 0.9600 C13 H13F 0.9600 loop_ _geom_torsion_atom_site_label_1 _geom_torsion_atom_site_label_2 _geom_torsion_atom_site_label_3 _geom_torsion_atom_site_label_4 _geom_torsion N2 C2 C3 C4 -178.69(19) C7 C2 C3 C4 0.9(3) C2 C3 C4 C5 -0.7(3) C3 C4 C5 C6 0.0(3) C4 C5 C6 C7 0.6(3) C5 C6 C7 N1 179.01(18) C5 C6 C7 C2 -0.4(3) C3 C2 C7 C6 -0.4(3) N2 C2 C7 C6 179.28(17) C3 C2 C7 N1 -179.92(16) N2 C2 C7 N1 -0.2(2) N3 C9 C10 C11 -0.7(3) C12 C9 C10 C11 178.78(17) C9 C10 C11 N4 0.4(3) C9 C10 C11 C13 -178.71(18) N2 C1 N1 C7 -0.6(2) N2 C1 N1 C8 179.06(16) C6 C7 N1 C1 -178.9(2) C2 C7 N1 C1 0.50(19) C6 C7 N1 C8 1.4(3) C2 C7 N1 C8 -179.20(16) N4 C8 N1 C1 -178.35(16) N3 C8 N1 C1 2.5(2) N4 C8 N1 C7 1.3(2) N3 C8 N1 C7 -177.90(15) N1 C1 N2 C2 0.5(2) C3 C2 N2 C1 179.5(2) C7 C2 N2 C1 -0.1(2) N4 C8 N3 C9 -0.3(3) N1 C8 N3 C9 178.76(14) C10 C9 N3 C8 0.6(2) C12 C9 N3 C8 -178.90(16) N3 C8 N4 C11 0.1(3) N1 C8 N4 C11 -179.01(14) C10 C11 N4 C8 -0.1(2) C13 C11 N4 C8 179.08(16)